Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma12g01197 ATGCTTTCTGAGAATACTAGAAAATCATTCCTGGAACCCTTGGGAAGTTTCCTTCAGCTAGCTTCATGCGTGATTGCAGTTTCAGTTGATCCATTCTTCTTATACATCCCTGTCATTAACGATCATGAAAAGTGCTTTGAATTTGACAAGAAGTTGCGGATAGCAGCTTTGGTTTTGCGATCGGTCACAGACATCATTTTCATGCTTCATATTGCTTTTCAGTTTCGTACTCGATACGTTGCGCGGCCCATTCTGTTTCACACAGATGGAGTAGATGAAAGAGTAGGTAGCTCTTGGGAAATACCTAAGACATATATGTTATCTTACTTCTTAATCGACATTCTATCACTTCTTCCCCTCCCTCAGGTAGTAATTTTATCTATTATTCCGGAGATGAAAGGCTCAAAATCTTTGATTGCAAAGAACATCCTTATAGCTCTTGTTTTATTGCAATATGTTCCCAGAGTTGTTCGCATTTACCCACTATACAAGAAACTTACGAGGACGCCAAGGATTTTCAAAGGAACTCCTTGGACTAAAGCTGCTTTTAATCTCTTTCTCTACATGCTAGCAAGTCATCTGATGTATTAG 591 39.09 MLSENTRKSFLEPLGSFLQLASCVIAVSVDPFFLYIPVINDHEKCFEFDKKLRIAALVLRSVTDIIFMLHIAFQFRTRYVARPILFHTDGVDERVGSSWEIPKTYMLSYFLIDILSLLPLPQVVILSIIPEMKGSKSLIAKNILIALVLLQYVPRVVRIYPLYKKLTRTPRIFKGTPWTKAAFNLFLYMLASHLMY 196
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 44907606 44908485 + Bma008555.1 Bma12g01197 92623
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma12g01197 196 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 6 195 - -
Bma12g01197 196 Pfam Ion transport protein 38 195 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Bma12g01197 196 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 1-LIKE 6 195 - -
Bma12g01197 196 SUPERFAMILY Voltage-gated potassium channels 18 194 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma12g01197 Bma-Chr12:44907606 Bma08g00382 Bma-Chr8:8627202 1.53E-64 dispersed
Bma12g01197 Bma-Chr12:44907606 Bma12g01200 Bma-Chr12:44952681 3.26E-98 proximal
Bma12g01196 Bma-Chr12:44900779 Bma12g01197 Bma-Chr12:44907606 1.66E-74 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma12g01197 K05391 - egt:105971636 222.631