Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma12g01200 CTTCAGCTAGCTTCATGTGTGATTGCAGTTTCACTTGATTCTTTATTCTTATACATCCCTGTCATTAACCATCATGAAAAGTGCTTTCATTTTGACAAGAAGTTGCGGATAGCAGCTTTGGTTTTGCGATCGGTCACAGACATCATTTTCATGCTTCATATTGCTTTTCAGTTTCGTACTCGATACGTTGCGAGGCCCATTCCGTCCCACATAGATGGAGTTAATGGTTATGTAGCTAGCTTAAAACGTATATGGGAAAGACTTAAGACGTATAGGTTATCTTACTTCTTAATCGACATTCTATCACTTCTTCCCCTCCCTCAGGTGGTAATTTTATCTATTATTCCAGAGATGAAAGGCTCAAAATCTTTGACTGCAAGGAACATCCTTACAGCCCTTGTTTTACTGCAATATGTTCCCAGAGTTGTTCGAATTTACCCATTATACAAGAAACTTAAGCGGACGCCAAGGATGTTCCAGGGAACTCCTTGGACTAAAGTTGCTCTTAATCTCTTTCTCTACCTGCTAGCAAGTCATGTACTTGGAGCAATGTGGTACTTCTTTTCCATTGAAAGAGAGATAACATGCTGGCAAAAAGCTTGTGAGGGTCATCCTGGTTGTGACCATAGTTCCTTCTTCTGTGATGATGGGATAAGAGCTATTGAATTCCTTCATGATACGTGTCCCATAGATACTCCAAATACAAATCTTTTTGACTTCGGTATATTCCTGGATGCCCTTCAGTCTGGTATTGTGGAGTCAGTCAATTTACCCCAAAAGCTTTTCCGTTGCCTCTGGTGGGGCCTCCAAAATTTGAGTTCTCTGGGTCAAAATCTCAAAACAAGTACCTATGTCTGGGAGAATATTTTTGCAGTTTTTATATCCACCTCTGGCTTGGTTCTATTTTTATATTTCATTGGAAATATGCAGGCATATATGCAGTTGAAAACTATGAAAGAAGAGGAGAAGAGAATGGTGATAAGGTCTAAGGCGCGAGATGTTGACTTATGGATGTCCAAAAATAATCTACCTAAACTTATTCAAAGTAAAATCAAGCCGTTTGTAGAAAAGAAATGGGATAAAATCATAATTGTGGATTCAGAAAATTTGATTCCAATTCTTCCCGCGGATCTCCGGAAAGATTTAATACGTCATTTCTGTCCGGAACTTGTTAAGAGAGTTCCCGTGCTTGCATTGATGGATTCTATGCTGTTGGATGACATGTATGGTCGTCTCAAACCAGTGGTCTATTCCGCAGAGATTTACGTCCTTCGGAAAGGTGATCCAGTTAAGCAAATGTGCTTCATCTCACGTGGCAAGGTGTTGTCAGGTGCAAATGTGGAAAGAACCGAACTACAGACTGGTGACTTCTGTGGAGAAGAACTATTGACCTGGGTTTTCAATGGTGGCCCCCTGACTAATCTCCCCATCTCAAATCAAACTGCCCGAGCTCTCACAGAAGTTGAAGCATATACCCTAACAGCAGAAGACTTGAAAGACTTGATCTCTAAGTTCTCGCTACAAGAAGACGGGTTGAAGCTCCGTCGCATTTTGAGATGTTACTCAGTGCAATGGATGACTTGGGCAGCTCGTGTCATCCAAATGGCATGGCATCGTTGGGCCAAAAGAACGCTCGAAGAATCACTTCGAAAAGAAGAGATAAGATTGCAACATGCATTGGCACACACTTGTGGAAGATCTACAAGTACAAGTGCTATCTTTTATGTATCTCCATTTACTCCTAATGCTCTTGGTTTAATCCGAGGTCGGAAGGCGAAAGAGGCCAAGATATATTCAGCCATGCATCTTCAGAAGCCGGCCGAGGAGGATAGTAGTTATAAGTGGAGGGAATAA 1854 41.48 LQLASCVIAVSLDSLFLYIPVINHHEKCFHFDKKLRIAALVLRSVTDIIFMLHIAFQFRTRYVARPIPSHIDGVNGYVASLKRIWERLKTYRLSYFLIDILSLLPLPQVVILSIIPEMKGSKSLTARNILTALVLLQYVPRVVRIYPLYKKLKRTPRMFQGTPWTKVALNLFLYLLASHVLGAMWYFFSIEREITCWQKACEGHPGCDHSSFFCDDGIRAIEFLHDTCPIDTPNTNLFDFGIFLDALQSGIVESVNLPQKLFRCLWWGLQNLSSLGQNLKTSTYVWENIFAVFISTSGLVLFLYFIGNMQAYMQLKTMKEEEKRMVIRSKARDVDLWMSKNNLPKLIQSKIKPFVEKKWDKIIIVDSENLIPILPADLRKDLIRHFCPELVKRVPVLALMDSMLLDDMYGRLKPVVYSAEIYVLRKGDPVKQMCFISRGKVLSGANVERTELQTGDFCGEELLTWVFNGGPLTNLPISNQTARALTEVEAYTLTAEDLKDLISKFSLQEDGLKLRRILRCYSVQWMTWAARVIQMAWHRWAKRTLEESLRKEEIRLQHALAHTCGRSTSTSAIFYVSPFTPNALGLIRGRKAKEAKIYSAMHLQKPAEEDSSYKWRE 617
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 44952681 44957067 + Bma008558.1 Bma12g01200 92626
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma12g01200 617 SMART cnmp_10 396 520 IPR000595 -
Bma12g01200 617 CDD CAP_ED 396 518 IPR000595 -
Bma12g01200 617 Gene3D Helix hairpin bin 320 387 - -
Bma12g01200 617 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 1-LIKE 4 611 - -
Bma12g01200 617 Gene3D Jelly Rolls 394 506 IPR014710 -
Bma12g01200 617 SUPERFAMILY cAMP-binding domain-like 322 505 IPR018490 -
Bma12g01200 617 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 4 611 - -
Bma12g01200 617 SUPERFAMILY Voltage-gated potassium channels 31 320 - -
Bma12g01200 617 Pfam Cyclic nucleotide-binding domain 415 504 IPR000595 -
Bma12g01200 617 Pfam Ion transport protein 29 315 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Bma12g01200 617 Gene3D - 5 315 - -
Bma12g01200 617 ProSiteProfiles cAMP/cGMP binding motif profile. 396 502 IPR000595 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma08g00382 Bma-Chr8:8627202 Bma12g01200 Bma-Chr12:44952681 0 dispersed
Bma10g01292 Bma-Chr10:45870772 Bma12g01200 Bma-Chr12:44952681 3.06E-123 dispersed
Bma12g01196 Bma-Chr12:44900779 Bma12g01200 Bma-Chr12:44952681 0 dispersed
Bma12g01200 Bma-Chr12:44952681 Bma14g02001 Bma-Chr14:43378290 1.56E-133 dispersed
Bma13g00522 Bma-Chr13:10439032 Bma12g01200 Bma-Chr12:44952681 6.78E-127 dispersed
Bma12g01197 Bma-Chr12:44907606 Bma12g01200 Bma-Chr12:44952681 3.26E-98 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma12g01200 K05391 - sind:105160375 624.394