Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Bma12g01203 ATGGACTTGGAAAGCATCGAGTGCGTTTCATCTTCTGATGGTTTCGATGAAGATGAAATCCATCAACACCGTACCCTTCACTCGCATCCGCATCCGCATCCTCTTCTTCACCCTGACATTTCAGCGTCGAAGCCTCGCAATGGCGCCAACAGTGGCGGTATAACGGGCTCAATTGCCATTGCTCCAGCCACCAGCGTCCACGAGTTGCTCGAGTGCCCCGTCTGCACTAATTCTATGTACCCACCAATCCATCAGTGTCATAATGGACATACCTTGTGTTCCACCTGCAAAACGAGGGTTCACAACCGCTGCCCCACTTGTCGACAAGAGCTCGGAGACATTCGGTGTCTAGCTCTAGAAAAAGTGGCCGAATCACTCGAGCTTCCTTGCAAGTATTACTCTTTGGGATGCCCCGAAATCTTCCCGTATTACAGCAAACTTAAGCATGAGGCTATGTGCAACTTCAGACCGTATACTTGTCCTTATGCTGGATCTGAGTGCTTGGTCGTGGGCGATATTCCTTTCTTGGTTGCTCATCTGAGGGACGATCACAAAGTGGACATGCACACTGGCTGTACATTTAATCATCGTTACGTAAAATCCAATCCTCGGGAAGTTGAGAATGCCACTTGGATGCTTACGTACCCTGTGCCAAATGGAACCAAGCCGAGGTTTGTTGTCTGTGAGATAAAGAAGAATCATCTCAAAGTAGGGCTCAAGGGACAGCCTCCTGTAATTGATGGAGAGCTTTATCGGATGGTCAAACCCGATGATTGCTTTTGGAGCATAGGACCAAAACACCATCTCTATTCTTTGACCAAAGTTGACCAAATGGAGTGGTGGAAGTCATTGGTAAAAGGCGATCCCGAGATCGATACTCAGAAGGTTGAACCAGAGTCCAGTAAACTAGCTGACCTAGATCCCGAAACCCGCCAAACTGTCGAAAAGATGATGTTTGATCAAAGGCAAAAGAGTATGGGACTGCCAACCAGCGATGAAATGCAGAAGCAAGAGATTTTGAAGAAGTTCATGGCTGAGCATCCAGAGATGGACTTTTCGAGGGCCAAGATGCCGTCTTAG 1080 47.96 MDLESIECVSSSDGFDEDEIHQHRTLHSHPHPHPLLHPDISASKPRNGANSGGITGSIAIAPATSVHELLECPVCTNSMYPPIHQCHNGHTLCSTCKTRVHNRCPTCRQELGDIRCLALEKVAESLELPCKYYSLGCPEIFPYYSKLKHEAMCNFRPYTCPYAGSECLVVGDIPFLVAHLRDDHKVDMHTGCTFNHRYVKSNPREVENATWMLTYPVPNGTKPRFVVCEIKKNHLKVGLKGQPPVIDGELYRMVKPDDCFWSIGPKHHLYSLTKVDQMEWWKSLVKGDPEIDTQKVEPESSKLADLDPETRQTVEKMMFDQRQKSMGLPTSDEMQKQEILKKFMAEHPEMDFSRAKMPS 359
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
12 44963733 44968159 - Bma008561.1 Bma12g01203 92629
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Bma12g01203 359 Pfam Seven in absentia protein family 114 214 IPR018121 GO:0005737|GO:0006511|GO:0007275
Bma12g01203 359 SUPERFAMILY RING/U-box 60 114 - -
Bma12g01203 359 PANTHER E3 UBIQUITIN-PROTEIN LIGASE 1 214 - -
Bma12g01203 359 Pfam CS domain 214 274 IPR007052 -
Bma12g01203 359 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 125 180 IPR013083 -
Bma12g01203 359 ProSiteProfiles CS domain profile. 191 285 IPR007052 -
Bma12g01203 359 Gene3D - 207 319 IPR008978 -
Bma12g01203 359 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 56 124 IPR013083 -
Bma12g01203 359 CDD p23_NUDC_like 213 285 - -
Bma12g01203 359 SUPERFAMILY TRAF domain-like 125 216 - -
Bma12g01203 359 CDD RING-HC_SIAHs 70 108 - -
Bma12g01203 359 ProSiteProfiles Zinc finger RING-type profile. 72 108 IPR001841 -
Bma12g01203 359 SUPERFAMILY HSP20-like chaperones 213 356 IPR008978 -
Bma12g01203 359 PANTHER E3 UBIQUITIN PROTEIN LIGASE SIAH 1 214 - -
Bma12g01203 359 MobiDBLite consensus disorder prediction 24 54 - -
Bma12g01203 359 ProSiteProfiles Zinc finger SIAH-type profile. 125 185 IPR013010 GO:0008270
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma02g01102 Bma-Chr2:52688346 Bma12g01203 Bma-Chr12:44963733 1.45E-69 dispersed
Bma14g01115 Bma-Chr14:14028103 Bma12g01203 Bma-Chr12:44963733 2.45E-21 transposed
Bma10g01302 Bma-Chr10:46420593 Bma12g01203 Bma-Chr12:44963733 2.09E-128 wgd
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma12g01203 K04506 - zju:107414770 396.741