Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Bma12g01203 | ATGGACTTGGAAAGCATCGAGTGCGTTTCATCTTCTGATGGTTTCGATGAAGATGAAATCCATCAACACCGTACCCTTCACTCGCATCCGCATCCGCATCCTCTTCTTCACCCTGACATTTCAGCGTCGAAGCCTCGCAATGGCGCCAACAGTGGCGGTATAACGGGCTCAATTGCCATTGCTCCAGCCACCAGCGTCCACGAGTTGCTCGAGTGCCCCGTCTGCACTAATTCTATGTACCCACCAATCCATCAGTGTCATAATGGACATACCTTGTGTTCCACCTGCAAAACGAGGGTTCACAACCGCTGCCCCACTTGTCGACAAGAGCTCGGAGACATTCGGTGTCTAGCTCTAGAAAAAGTGGCCGAATCACTCGAGCTTCCTTGCAAGTATTACTCTTTGGGATGCCCCGAAATCTTCCCGTATTACAGCAAACTTAAGCATGAGGCTATGTGCAACTTCAGACCGTATACTTGTCCTTATGCTGGATCTGAGTGCTTGGTCGTGGGCGATATTCCTTTCTTGGTTGCTCATCTGAGGGACGATCACAAAGTGGACATGCACACTGGCTGTACATTTAATCATCGTTACGTAAAATCCAATCCTCGGGAAGTTGAGAATGCCACTTGGATGCTTACGTACCCTGTGCCAAATGGAACCAAGCCGAGGTTTGTTGTCTGTGAGATAAAGAAGAATCATCTCAAAGTAGGGCTCAAGGGACAGCCTCCTGTAATTGATGGAGAGCTTTATCGGATGGTCAAACCCGATGATTGCTTTTGGAGCATAGGACCAAAACACCATCTCTATTCTTTGACCAAAGTTGACCAAATGGAGTGGTGGAAGTCATTGGTAAAAGGCGATCCCGAGATCGATACTCAGAAGGTTGAACCAGAGTCCAGTAAACTAGCTGACCTAGATCCCGAAACCCGCCAAACTGTCGAAAAGATGATGTTTGATCAAAGGCAAAAGAGTATGGGACTGCCAACCAGCGATGAAATGCAGAAGCAAGAGATTTTGAAGAAGTTCATGGCTGAGCATCCAGAGATGGACTTTTCGAGGGCCAAGATGCCGTCTTAG | 1080 | 47.96 | MDLESIECVSSSDGFDEDEIHQHRTLHSHPHPHPLLHPDISASKPRNGANSGGITGSIAIAPATSVHELLECPVCTNSMYPPIHQCHNGHTLCSTCKTRVHNRCPTCRQELGDIRCLALEKVAESLELPCKYYSLGCPEIFPYYSKLKHEAMCNFRPYTCPYAGSECLVVGDIPFLVAHLRDDHKVDMHTGCTFNHRYVKSNPREVENATWMLTYPVPNGTKPRFVVCEIKKNHLKVGLKGQPPVIDGELYRMVKPDDCFWSIGPKHHLYSLTKVDQMEWWKSLVKGDPEIDTQKVEPESSKLADLDPETRQTVEKMMFDQRQKSMGLPTSDEMQKQEILKKFMAEHPEMDFSRAKMPS | 359 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 12 | 44963733 | 44968159 | - | Bma008561.1 | Bma12g01203 | 92629 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Bma12g01203 | 359 | Pfam | Seven in absentia protein family | 114 | 214 | IPR018121 | GO:0005737|GO:0006511|GO:0007275 | |
| Bma12g01203 | 359 | SUPERFAMILY | RING/U-box | 60 | 114 | - | - | |
| Bma12g01203 | 359 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE | 1 | 214 | - | - | |
| Bma12g01203 | 359 | Pfam | CS domain | 214 | 274 | IPR007052 | - | |
| Bma12g01203 | 359 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 125 | 180 | IPR013083 | - | |
| Bma12g01203 | 359 | ProSiteProfiles | CS domain profile. | 191 | 285 | IPR007052 | - | |
| Bma12g01203 | 359 | Gene3D | - | 207 | 319 | IPR008978 | - | |
| Bma12g01203 | 359 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 56 | 124 | IPR013083 | - | |
| Bma12g01203 | 359 | CDD | p23_NUDC_like | 213 | 285 | - | - | |
| Bma12g01203 | 359 | SUPERFAMILY | TRAF domain-like | 125 | 216 | - | - | |
| Bma12g01203 | 359 | CDD | RING-HC_SIAHs | 70 | 108 | - | - | |
| Bma12g01203 | 359 | ProSiteProfiles | Zinc finger RING-type profile. | 72 | 108 | IPR001841 | - | |
| Bma12g01203 | 359 | SUPERFAMILY | HSP20-like chaperones | 213 | 356 | IPR008978 | - | |
| Bma12g01203 | 359 | PANTHER | E3 UBIQUITIN PROTEIN LIGASE SIAH | 1 | 214 | - | - | |
| Bma12g01203 | 359 | MobiDBLite | consensus disorder prediction | 24 | 54 | - | - | |
| Bma12g01203 | 359 | ProSiteProfiles | Zinc finger SIAH-type profile. | 125 | 185 | IPR013010 | GO:0008270 |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Bma02g01102 | Bma-Chr2:52688346 | Bma12g01203 | Bma-Chr12:44963733 | 1.45E-69 | dispersed | |
| Bma14g01115 | Bma-Chr14:14028103 | Bma12g01203 | Bma-Chr12:44963733 | 2.45E-21 | transposed | |
| Bma10g01302 | Bma-Chr10:46420593 | Bma12g01203 | Bma-Chr12:44963733 | 2.09E-128 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Bma12g01203 | K04506 | - | zju:107414770 | 396.741 |