Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma12g01207 CAGGAATCTCCAATAGTAGTTGGTGCTGCTGTAGCAGCCGCAGCCTTGGGAGGAAAATACTTGATTGGAGCTTGGCAAGTGTTCAAAACTCGCCTGTCTTCTCCCCAAGCTCGAAGATTCTACTACGGAGGATTTGAACAAGTCATGAGCAAGCGAGAAGCGGCCTTAATTCTCGGCATTCGGGAAGGTGCAGTGATGGAGAAGATAAAAGAAGCTCATAGGAAAGTAATGGTGGCAAATCACCCTGATGCAGGTGGCAGCCATTATCTTGCTTCCAAGATAAACGAAGCTAAGGACATTTTGGTGGGAAGAAGATCAACTCCCTCTCCCTTCTAA 336 47.32 QESPIVVGAAVAAAALGGKYLIGAWQVFKTRLSSPQARRFYYGGFEQVMSKREAALILGIREGAVMEKIKEAHRKVMVANHPDAGGSHYLASKINEAKDILVGRRSTPSPF 111
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 45014408 45014927 + Bma008567.1 Bma12g01207 92633

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma12g01207 111 Gene3D DnaJ domain 39 104 IPR036869 -
Bma12g01207 111 ProSiteProfiles dnaJ domain profile. 53 106 IPR001623 -
Bma12g01207 111 PANTHER MITOCHONDRIAL IMPORT INNER MEMBRANE TRANSLOCASE SUBUNIT TIM14-3-LIKE 2 107 - -
Bma12g01207 111 SMART dnaj_3 52 106 IPR001623 -
Bma12g01207 111 SUPERFAMILY Chaperone J-domain 43 103 IPR036869 -
Bma12g01207 111 CDD DnaJ 57 101 IPR001623 -
Bma12g01207 111 PANTHER UNCHARACTERIZED 2 107 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma12g01207 K09539 DNAJC19; DnaJ homolog subfamily C member 19 - qsu:112012081 169.859
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma04g00616 Bma-Chr4:5869627 Bma12g01207 Bma-Chr12:45014408 6.11E-40 dispersed
Bma12g01207 Bma-Chr12:45014408 Bma12g01268 Bma-Chr12:45705899 3.09E-76 dispersed
Bma12g01207 Bma-Chr12:45014408 Bma12g01209 Bma-Chr12:45046220 7.63E-75 proximal
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g996 . . Bda06g00852 . . . . Bma12g01207 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Blo15g00034 . . Bpe07g01073 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002486 3 2 1 4 3 2 1 2 1 2 1 2 2 2 2 1 2 3 2 1 2 2 2 2 2 1 2 3 2 3 60
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma12g01207 Bma_Chr12 FPKM 27.576006 34.09417 67.770714 73.770805 30.960562 25.694963 32.314545 32.161915 31.623125 32.687706