Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma12g01208 ATGGCTGGTGTTGATAAAGATGATGTTCCAATGCTATCAGACACAAACCCATCATTATACGATGAACAAATGAATTCTCGATTTCAGTCATTCAATTCAGCTTCAAGAAGTTCGTCAATTTCAGTTCCAATCAATATCATTTCTACCTACGAGTGCAAGCTCGCTGGCTATACCGGCCCTCTACAGAGTGAAAGAAGAACTCCTTTTCCACAGATGAGGGGAAAAGAACCAACTGCTGAAAATATTCGATCTTGGGAAGGAAAGAGCAGGGCGGGTTGGTCCAATAGAAACAATGATGGAAAAAATCAACATTTATTGCAATCTGGTCGGTTGGGACGGTGTAGTGATCCTTATTGCACAACTTGTCCAACCTACAATGTTAAAACTGCACAGCAGAAGAGTGCAAGAGGCTCTGGCTTATTTGAACACAAGTTTCATAATGCTCTTTACAAAGGCTGGGCTAGGAAGTTTTGGTCCTTTATGAATCCATATATTCCAGGAGTGATGAATCCTCATACAAAGATTATCCAAAAGTGGAACAAGTTTTTTGTTATTGCTTGCTTAGTGGCGATTTTTTTCGACCCTTTATTTTTCTTCCTACTTTCTGTCCATCAGGATAATAAGTGCATAGGTTTAGATTGGCCCATGACTAAAACACTGGTGGTTTTCAGAAGCATGACAGATTTTAATTACCTTCTCCACATCCTTCTTCAGTTTCGGTTGGCTTATGTGGCTCCTGAATCTAGAGTAGTTGGAGCAGGAGAATTAGTGGACCATCCAAAGAAAATTGCTCTGAATTACCTTAAGAGTTTCTTTTTTGTTGACTTATTTGTAGCATTGCCGCTTCCTCAAATTATAGTTCTATTTATACTACCAAAATCGCTTGGATCGTCTGGAGCAAACTACGCAAAAAATCTTTTACGTGCAACAGTTGTTGTGCAATACATACCCAGATTGTTTAGATTTTTGCCACTTCTGGTTGGTCAGTCTCCAAATGGCTTCATATTTGAGACTGCATGGGCCAATTTTGTTCTCAATCTTTTCACGTTCATGTTGTCTGGCCACGTCGTCGGCTCTTTATGGTACCTCTTTGGATTACAGAGGGTCAACCAATGTCTTCGAATTGCTTGCGGAAACTCTGGAATTCAATCGTGCCCGACATTTATAGATTGTGGACATGGGGATGATGTTAACAGATTTGATAGTTATCCAACTTGGAACAGCTGGAAAAGCAATGATAATGCTACCTCTTGCTTTACTTCAGATGGATATCCTTACGGAATTTACATTCAAGCTGTCAGTCTAGTCTCGCAAAGTAGTACGACCCGAAGATACGTTTACTCCCTTTTTTGGGGATTTCAGCAAATCAGTACTCTTGCTGGGAATCAAGTTCCAAGCTTTTTTGTGGCGGAAGTTCTTTTCACTATGTTCATTATTGGACTTGGTCTTTTGTTATTTGCTCTACTTATTGGAAATATGCAAAACTTCCTCCAGGCCCTCGGTCAAAGGAGGTTACAAATGTCATTAAGACGGCGTGACGTCGAGCAGTGGATGGCACATCGGCGTTTGCCTGTCGAACTCAAAAAGCAAGTACGGGAAGCCGAAAGGTACAGTTGGGCTGCTACGAGAGGCGTAAACGAAGAAACGCTCTTGGTGAATTTGCCCGAAGATCTTCAAAGAGATATACGACGCCATCTCTTCACGTTCTTAAAGAAAGTTAGGATTTTTTCATTGATGGACGAACCGATTTTAGATTCGATACGGGAGAAACTAAGACAAAGGACGTATATACAAGGAAGTGAAGTTTTTTTCAAAGGCGGTCTCGTCGAGAAGATGGTTTTCATTGTTAGAGGAAAAATGGAGAGTTTGGGAGCCGATGGGATCGTGGTCCCGTTGTCGGAAGGAGATGTTTGTGGGGAAGAACTTCTAGCATGGTGTCTTGAACATTCTTCTGTGAATAGAGACGGAAAAAGAACTAGCATTACCGGACCGAGATTGGTCAGCACTCGGACGGTGAGTTGCTTGACGAATGTGGAAGCATTTTCTCTCCACGTTGCCGATCTTGAACAAGTGACGAGTCTTTTTGCAAGATTCTTGCGAAATCATCGTGTTCAAGGAGCCATACGATATGAATCTCCCTACTGGAGAAGCTTAGCAGCAAATCGGATTCAAGTCGCATGGAGATACCGGAAAAAGCGTCGAATTCGAGCCGACTCGTGTTTGTAG 2226 41.96 MAGVDKDDVPMLSDTNPSLYDEQMNSRFQSFNSASRSSSISVPINIISTYECKLAGYTGPLQSERRTPFPQMRGKEPTAENIRSWEGKSRAGWSNRNNDGKNQHLLQSGRLGRCSDPYCTTCPTYNVKTAQQKSARGSGLFEHKFHNALYKGWARKFWSFMNPYIPGVMNPHTKIIQKWNKFFVIACLVAIFFDPLFFFLLSVHQDNKCIGLDWPMTKTLVVFRSMTDFNYLLHILLQFRLAYVAPESRVVGAGELVDHPKKIALNYLKSFFFVDLFVALPLPQIIVLFILPKSLGSSGANYAKNLLRATVVVQYIPRLFRFLPLLVGQSPNGFIFETAWANFVLNLFTFMLSGHVVGSLWYLFGLQRVNQCLRIACGNSGIQSCPTFIDCGHGDDVNRFDSYPTWNSWKSNDNATSCFTSDGYPYGIYIQAVSLVSQSSTTRRYVYSLFWGFQQISTLAGNQVPSFFVAEVLFTMFIIGLGLLLFALLIGNMQNFLQALGQRRLQMSLRRRDVEQWMAHRRLPVELKKQVREAERYSWAATRGVNEETLLVNLPEDLQRDIRRHLFTFLKKVRIFSLMDEPILDSIREKLRQRTYIQGSEVFFKGGLVEKMVFIVRGKMESLGADGIVVPLSEGDVCGEELLAWCLEHSSVNRDGKRTSITGPRLVSTRTVSCLTNVEAFSLHVADLEQVTSLFARFLRNHRVQGAIRYESPYWRSLAANRIQVAWRYRKKRRIRADSCL 741
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 45032197 45043368 - Bma008569.1 Bma12g01208 92634
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma12g01208 741 MobiDBLite consensus disorder prediction 88 104 - -
Bma12g01208 741 ProSiteProfiles cAMP/cGMP binding motif profile. 575 643 IPR000595 -
Bma12g01208 741 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 5 738 - -
Bma12g01208 741 MobiDBLite consensus disorder prediction 1 20 - -
Bma12g01208 741 CDD CAP_ED 575 691 IPR000595 -
Bma12g01208 741 SUPERFAMILY Voltage-gated potassium channels 171 504 - -
Bma12g01208 741 Gene3D - 180 500 - -
Bma12g01208 741 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 20, CHLOROPLASTIC-RELATED 5 738 - -
Bma12g01208 741 MobiDBLite consensus disorder prediction 63 104 - -
Bma12g01208 741 SMART cnmp_10 575 710 IPR000595 -
Bma12g01208 741 Pfam Ion transport protein 179 503 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Bma12g01208 741 Gene3D Jelly Rolls 573 697 IPR014710 -
Bma12g01208 741 SUPERFAMILY cAMP-binding domain-like 502 699 IPR018490 -
Bma12g01208 741 Gene3D Helix hairpin bin 502 567 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma08g00128 Bma-Chr8:1666230 Bma12g01208 Bma-Chr12:45032197 1.13E-49 dispersed
Bma12g01208 Bma-Chr12:45032197 Bma12g01267 Bma-Chr12:45691879 0 dispersed
Bma12g01208 Bma-Chr12:45032197 Bma12g01266 Bma-Chr12:45683027 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma12g01208 K05391 - qsu:112012074 1040.02