Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma12g01211 ATGGTGCTGACGACGACCTCGTCTTACTCTGATGATAGTATCAACTCCACCTTTGCTTCCAGATACGTCAGAATTCCTCTACCGAAATTCAAGATGGGGGAAAATCAAATACCAAAAGAAGCGGCATATCAAATAATAAACGACGAGTTGATGTTGGATGGAGCGCCGAGATTAAACCTCGCCTCTTTTGTGACCACTTGGATGGAGCCAGAGTGCGACAAGCTGATCATGGCTTCTATGAACAAGAACTACGTTGACATGGATGAGTACCCTGTCACCACTGAGCTCCAGAATCGTTGCGTGAATATTATTGCCAACCTATTTAATGCACCTGTTAAAGAAGATGAAGCTGCAGTCGGCGTGGGTACTGTAGGTTCATCAGAGGCAATAATGCTGGCTGGCCTTGCTTTTAAAAGGAAATGGCAGCAAAAGAGAAAATCAGAAGGCCGACCATTTGATAAACCCAACATAGTTACTGGAGCAAACGTACAGGTATGCTGGGAGAAGTTTGCAAGGTACTTCGAGGTGGAGCTGAAGGAGGTCAAACTGTCTGAAGGATTTTACGTTATGGACCCTGTAAAAGCAGTTGAAATGGTGGATGAAAACACCATCTGCGTTGCAGCTATTCTGGGCTCGACACTGACCGGAGAGTTTGAAGACGTTAAACTTCTTAACGAGCTTCTCACTATGAAGAACAAGGAGACAGGATGGGACACCCCAATTCACGTTGATGCTGCTAGTGGAGGATTTATAGCTCCATTTCTTTACCCTGAGCTCGAGTGGGATTTTCGATTGCCATTAGTGAAGAGTATTAATGTCAGTGGCCACAAGTATGGCCTTGTCTACCCTGGTGTTGGTTGGGTTGTGTGGAGAAGTAAAGAAGACTTGCCCGAAGAACTTATATTTCATATTAACTATCTTGGATCTGATCAACCCACTTTCACCCTCAACTTCTCCAAAGGCTCGAGCCAGATTATTGCTCAGTATTATCAGTTCATAAGACTCGGATTTGAGGTAAGTCATAATAAAAATTGTTTCTTGGGACCAGCTATATTTTACTTTGGTTACAAGAACATTATGAAGAATTGCATAGAAAATTCAAGAGTTTTGAAAGAAGGAATAGAAAAAATGGGAAAATTCACGATTCTCTCCAAAGATGTTGGAGTTCCCCTTGTCGCTTTCTCTCTAAAAGACAGTAAAAACTACACAGTATTTGACATAGCAGAGAGTTTGAGAAGGTATGGGTGGATTGTACCGGCATATACGATGCCACCAAATGCTGAGAACATAGCTGTTCTAAGAGTGGTGATAAGGGAGGACTTCAGCTGTGGCTTGGCGGATAGGCTTATATCAGACATTGAGAAAGTTTTGAAGGAACTGGGAGGGCCGTCTAGCCGGATGTCTATAAAATCAGCTCTTGTTGAAGCCAATGTTGAAGAAGCAGAGAATGGTGAAAAAGGTGGTTCAGAGACCGTTAAAAAGAGTGTGAAAGAGATTGAGAAGGAGGTTTTTACTTACTGGAAGAAGCTTGTGGATGGGAAGAAAACTGGGGTCTGCTAA 1560 42.95 MVLTTTSSYSDDSINSTFASRYVRIPLPKFKMGENQIPKEAAYQIINDELMLDGAPRLNLASFVTTWMEPECDKLIMASMNKNYVDMDEYPVTTELQNRCVNIIANLFNAPVKEDEAAVGVGTVGSSEAIMLAGLAFKRKWQQKRKSEGRPFDKPNIVTGANVQVCWEKFARYFEVELKEVKLSEGFYVMDPVKAVEMVDENTICVAAILGSTLTGEFEDVKLLNELLTMKNKETGWDTPIHVDAASGGFIAPFLYPELEWDFRLPLVKSINVSGHKYGLVYPGVGWVVWRSKEDLPEELIFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEVSHNKNCFLGPAIFYFGYKNIMKNCIENSRVLKEGIEKMGKFTILSKDVGVPLVAFSLKDSKNYTVFDIAESLRRYGWIVPAYTMPPNAENIAVLRVVIREDFSCGLADRLISDIEKVLKELGGPSSRMSIKSALVEANVEEAENGEKGGSETVKKSVKEIEKEVFTYWKKLVDGKKTGVC 519
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 45051671 45055562 + Bma008572.1 Bma12g01211 92637
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma12g01211 519 PANTHER GLUTAMATE DECARBOXYLASE 1 519 - -
Bma12g01211 519 SUPERFAMILY PLP-dependent transferases 13 460 IPR015424 -
Bma12g01211 519 PANTHER GLUTAMATE DECARBOXYLASE 1 519 IPR010107 GO:0004351|GO:0006536|GO:0030170
Bma12g01211 519 CDD DOPA_deC_like 59 455 - -
Bma12g01211 519 TIGRFAM Glu-decarb-GAD: glutamate decarboxylase 16 460 IPR010107 GO:0004351|GO:0006536|GO:0030170
Bma12g01211 519 Gene3D - 66 376 IPR015421 GO:0003824
Bma12g01211 519 Gene3D - 1 65 - -
Bma12g01211 519 Gene3D - 377 462 - -
Bma12g01211 519 Pfam Pyridoxal-dependent decarboxylase conserved domain 38 397 IPR002129 GO:0016830|GO:0019752|GO:0030170
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma12g01211 Bma-Chr12:45051671 Bma12g01270 Bma-Chr12:45712232 0 dispersed
Bma12g01211 Bma-Chr12:45051671 Bma02g00560 Bma-Chr2:11649214 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma12g01211 K01580 - qsu:112038575 816.224