Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma12g01219 ATGGATAGCTTCAGCCACGACGAAGAAAGTCGATTTTTCGATGCCCAAGAGGATATCGAGTCGTCTTCTGAAGCAAGTAGGGATAGCATTGAGGTAAATAATTCTAATTTTGGTTTTAACGCATTGGTTGAGGGGAGTTTCGTGTATGATTTATGGAATCAAAGTCCTCTGAGTGTTGACGAGCGACGAACAAAGTTTTTGAGAATGATGGGACTAAAGTTAGACCGAATTTCGGGTGATAATTCTGTAGTTGTTCACAGCAATGTGAGCGGTGGAGAAGCGTCTACAACGAGCGAAAATGGAGAGGCTATGGCGGGAATTCCAGCATTTGAAGATGGGTTTTATTCGAGTCGATCGTCAATGTCGTGTTTCCCCAGCGAGAACTGTGAAGTTTTAGAGGAATTGAGATCGAAGAAGAACTTTTCGTGCAGCGATGGAACTGCAGATTGTGGTTGCTCAGGCGATTCATCAAGCAGTTGTTCATCACAATCGTCTCAACAACATAAGGAATCGATACCTGCAAATCCGAGACGTTTTGAGGATATGACTAGAAGAGTCGATAAGAGTTGGTTGAGGAGATTAAGTTCCATTGCATGTGTGTTTGATAGTCACAATAAAGGAGTTAAATTCAAATCGGACGACGAAGATGAAGGTCGAATGTTTGGCGTTCAGAGAGTTAAGGTTCGGCAGAGCAAGAAACAATCGAAGGAACTCTCTGCTCTCTTTACAGGTCACGATATCCAGGCTCATGAAGGTGCTATATTGGCCATGAAATTCAGTCTGGACGGGAGGTATCTTGCAAGCGGCGGCGAAGACGGGATCGTGAAAGTCTGGCAAGTGATCGAGGACGAGAGATCGAATGAACATGATATTCAGGTTTTTGATCAGTCCTGCATTTACTTCTCTGTGAATCATCTCTCTGAACTGAAACCCCTACTTGTGGATAAAGACAAACTTTACAACTCAACAAGTTTGAAAAAAACATCCGAATCGGCCTGCGTCGTTTTCCCTCCTAAAATCTTCCGAATATTGGAGAAACCATTGCACGAGTTCTGCGGCCACAATGGCGAGATTTTGGATCTCTCGTGGTCACAAGAGAAGTATCTCCTTTCGTCGTCCGTCGACAAAACCGTTCGTCTTTGGCGGGTTGGAAGCAAAGATTGCCTCAAAGTATTTTCGCATAGCAATTACGTGACGTGCGTGCAGTTTAACCCGGTGGACGAAAATTACTTCATGAGCGGATCGATAGATGGAAAAGTACGGATTTGGGGAATTTCTTGTTCCCAAGTTGTGGATTGGACCAACATTAGAGAGATAGTTACTGCAGTGTGTTATCGTCCCGACGGGCAGGGTAGTGTTGTCGGCTCAATTGACGGAAACTGTCGCTTTTATACCATTTCAGCAGATAATCATCTGCAATTGGAAGCTCAAATTGGCTTGCACGGCAAGAAGAAATCGGCGAGTAAGAAGATAACAAGCTTTCAGTTTCTTCCTCAAGATTCTAGCATGCTAATGGTTAGCTCTGCCGATTCCCAAATCAGAATTCTTCACGGCCCTTGCGTGGTCGGTAAATACAAAGGAATTCGTAAAGCCGGAAACCAGATTTCTGCATCTCTAACATCAGACGGAAAACATATAATCTCGGCTTGTGGGAATTCTAACGTATGCGTATGGAACTGCGGGGACCAAAACGATACTTCTTTGTCTCGAGCCAAAAGATGTTATGAACACTTCTCGGCCAATGCTTCCATTGCGATTCCTTGGAGTGGTTTCGGATGTGGGAACTTGAACGGTGAAAGGCAATTTCATGGATTCGACCCGGAATTATCAGAACTTCTGCCTTTCTCTTCGACTGCGCGATTCTCTCTAAACCAGGAATTCTTCTTGGAGTCTTTGCCGAAAGGATCTGCGACTTGGCCTGAAGAGAAACTTCCTACTTCGAGCAACCTAAGGATGCATAAATCTCGATACAAGTTTCTCAAGGAGTCTTGCCAGAGCGCATCTGAGTCCCATGCGTGGGGACTGGTTATCGTGACTGCTGGCTGGGACGGCCGGATAAGATCGTTTCACAGCTATGGACTACCGGCACCTGTTTGA 2097 45.02 MDSFSHDEESRFFDAQEDIESSSEASRDSIEVNNSNFGFNALVEGSFVYDLWNQSPLSVDERRTKFLRMMGLKLDRISGDNSVVVHSNVSGGEASTTSENGEAMAGIPAFEDGFYSSRSSMSCFPSENCEVLEELRSKKNFSCSDGTADCGCSGDSSSSCSSQSSQQHKESIPANPRRFEDMTRRVDKSWLRRLSSIACVFDSHNKGVKFKSDDEDEGRMFGVQRVKVRQSKKQSKELSALFTGHDIQAHEGAILAMKFSLDGRYLASGGEDGIVKVWQVIEDERSNEHDIQVFDQSCIYFSVNHLSELKPLLVDKDKLYNSTSLKKTSESACVVFPPKIFRILEKPLHEFCGHNGEILDLSWSQEKYLLSSSVDKTVRLWRVGSKDCLKVFSHSNYVTCVQFNPVDENYFMSGSIDGKVRIWGISCSQVVDWTNIREIVTAVCYRPDGQGSVVGSIDGNCRFYTISADNHLQLEAQIGLHGKKKSASKKITSFQFLPQDSSMLMVSSADSQIRILHGPCVVGKYKGIRKAGNQISASLTSDGKHIISACGNSNVCVWNCGDQNDTSLSRAKRCYEHFSANASIAIPWSGFGCGNLNGERQFHGFDPELSELLPFSSTARFSLNQEFFLESLPKGSATWPEEKLPTSSNLRMHKSRYKFLKESCQSASESHAWGLVIVTAGWDGRIRSFHSYGLPAPV 698
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 45091080 45093918 - Bma008581.1 Bma12g01219 92645

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma12g01219 698 Gene3D - 228 584 IPR015943 GO:0005515
Bma12g01219 698 PRINTS G protein beta WD-40 repeat signature 411 425 IPR020472 -
Bma12g01219 698 PRINTS G protein beta WD-40 repeat signature 266 280 IPR020472 -
Bma12g01219 698 PRINTS G protein beta WD-40 repeat signature 369 383 IPR020472 -
Bma12g01219 698 MobiDBLite consensus disorder prediction 1 25 - -
Bma12g01219 698 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 351 383 - -
Bma12g01219 698 SUPERFAMILY WD40 repeat-like 246 688 IPR036322 GO:0005515
Bma12g01219 698 PANTHER WD REPEAT DOMAIN 44 6 697 IPR040324 -
Bma12g01219 698 PANTHER TRANSDUCIN/WD40 REPEAT-LIKE SUPERFAMILY PROTEIN 6 697 - -
Bma12g01219 698 ProSiteProfiles Trp-Asp (WD) repeats profile. 351 391 IPR001680 GO:0005515
Bma12g01219 698 ProSiteProfiles Trp-Asp (WD) repeats profile. 391 426 IPR001680 GO:0005515
Bma12g01219 698 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 391 426 - -
Bma12g01219 698 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 247 280 - -
Bma12g01219 698 SMART WD40_4 471 517 IPR001680 GO:0005515
Bma12g01219 698 SMART WD40_4 235 279 IPR001680 GO:0005515
Bma12g01219 698 SMART WD40_4 344 382 IPR001680 GO:0005515
Bma12g01219 698 SMART WD40_4 385 424 IPR001680 GO:0005515
Bma12g01219 698 SMART WD40_4 426 465 IPR001680 GO:0005515
Bma12g01219 698 SMART WD40_4 518 559 IPR001680 GO:0005515
Bma12g01219 698 MobiDBLite consensus disorder prediction 158 179 - -
Bma12g01219 698 ProSiteProfiles Trp-Asp (WD) repeats profile. 247 288 IPR001680 GO:0005515
Bma12g01219 698 MobiDBLite consensus disorder prediction 1 27 - -
Bma12g01219 698 MobiDBLite consensus disorder prediction 158 172 - -
Bma12g01219 698 Pfam WD domain, G-beta repeat 387 423 IPR001680 GO:0005515
Bma12g01219 698 Pfam WD domain, G-beta repeat 346 381 IPR001680 GO:0005515
Bma12g01219 698 Pfam WD domain, G-beta repeat 242 278 IPR001680 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma12g01219 - - - zju:107421839 805.438
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bma12g01219 Bma14g02015 CCT
Bma10g01307 Bma12g01219 CCT
Bma12g01219 Bma14g02015 ECH
Bma10g01307 Bma12g01219 ECH
Bma08g00392 Bma12g01219 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma12g01219 Bma-Chr12:45091080 Bma15g00824 Bma-Chr15:20240482 5.31E-128 dispersed
Bma10g01307 Bma-Chr10:46463325 Bma12g01219 Bma-Chr12:45091080 0 wgd
Bma12g01219 Bma-Chr12:45091080 Bma14g02015 Bma-Chr14:43527149 0 wgd
Bma12g01219 Bma-Chr12:45091080 Bma08g00392 Bma-Chr8:9571394 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g1012 . Blo15g00080 Bda05g00130 Bda07g01942 Bpe03g00197 Bpe07g01024 Bma10g01307 Bma14g02015 . . Cma02g01133 Cma15g01017 Car02g00936 Car15g00952 . Cpe05g00590 . . . . . . . . Cla01g00031 . Cec01g0028 Cco01g0030 Clacu01g0030 Cmu01g0029 Cre09g2477 Cone1ag0999 Cone5ag0704 . . . . . . Blo07g00327 Blo09g00017 Bda06g00793 Bda15g00789 . Bpe12g00345 Bma08g00392 Bma12g01219 . Cmo02g01161 Cmo15g01081 . . . . . Cpe13g00320 Bhi12g00667 . . . Hepe06g0808 . . . . . . . . . Lsi09g00011 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003050 4 4 3 4 3 0 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 3 4 1 52
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma12g01219 Bma_Chr12 FPKM 58.308216 64.019203 131.004333 134.399551 18.319374 20.854296 20.722116 1.225234 1.674663 1.229533