Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma12g01221 ATGGCGGCCTTCACTTCTATTGCCCCTAATTTATCATCCTCCTTCGACCCAAAATTCCCACTCTCTTCTAAACCAGTGTCCGATCATTGTTCTTTCACTTTCTCTCTAGGATCCGTTCGCTACTCCACCCAAACCTCTTCTTCGCCTGCTATCTCTATCTCCAGAGGCCTCCAAATCCAGAGCGCGGCGACTAAACCTGCGAAATCACCAGCGATTCTGAGTTTGGACTTTGTTGTTTGCTTGTTTTTGGAGGAATTAGCGGAAGAAGACTGGAAGATTAAGCGGGAAGTTCTACTGCAGAAGAAGGTGAGGAGCGTGGATGTGAAAGAAGCTCTCCGTCTTCAAAATGAAAATAACTTCGTGATTCTTGACGTTAGGCCTGAAGCAGAGTTCAAAGAGGGCCATCCACCGGGCGCCATTAACGTCCAAATATACAGGCTGATAAAGGAGTGGACAGCTTGGGACATCGCTAGGCGAGCAGCATTTGCATTTTTCGGCATCTTCTCTGGAACTGAAGAGAACCCAGAATTTCTCCAGATTGTGGAATCAAAGATGTCTAAAGACGCTAAGATAATAGTCGCCTGCTCTTCTGGGGGGACCACGAAACCCACCCAAAGTCTTCCTGAAGGTCAACAATCAAGATCGCTGATAGCAGCCTACTTGCTGGTTCTAAATGGCTACACCAACGTGTTTCACTTAGAAGGAGGCCTGAATTCGTGGTTCAAGGAAGGCCTTCCAGCAGAGGCAGAAGATTGA 756 47.49 MAAFTSIAPNLSSSFDPKFPLSSKPVSDHCSFTFSLGSVRYSTQTSSSPAISISRGLQIQSAATKPAKSPAILSLDFVVCLFLEELAEEDWKIKREVLLQKKVRSVDVKEALRLQNENNFVILDVRPEAEFKEGHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFLQIVESKMSKDAKIIVACSSGGTTKPTQSLPEGQQSRSLIAAYLLVLNGYTNVFHLEGGLNSWFKEGLPAEAED 251
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 45099402 45100505 + Bma008583.1 Bma12g01221 92647

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma12g01221 251 SMART rhod_4 106 246 IPR001763 -
Bma12g01221 251 Pfam Rhodanese-like domain 108 241 IPR001763 -
Bma12g01221 251 Gene3D - 90 248 IPR036873 -
Bma12g01221 251 SUPERFAMILY Rhodanese/Cell cycle control phosphatase 100 246 IPR036873 -
Bma12g01221 251 PANTHER RHODANESE-LIKE DOMAIN-CONTAINING PROTEIN 14, CHLOROPLASTIC 16 250 - -
Bma12g01221 251 ProSiteProfiles Rhodanese domain profile. 116 249 IPR001763 -
Bma12g01221 251 CDD RHOD 110 240 - -
Bma12g01221 251 PANTHER RHODANESE-LIKE DOMAIN-CONTAINING PROTEIN 14, CHLOROPLASTIC-RELATED 16 250 IPR043186 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma12g01221 - - - vvi:100245212 328.946
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma12g01059 Bma-Chr12:42706912 Bma12g01221 Bma-Chr12:45099402 2.29E-07 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g997 . Blo15g00078 . . . Bpe07g01026 . . Cmo16g00036 . . . . . Sed07g0876 . Cpe14g00024 Bhi01g01519 Tan01g0061 Cmetu06g0246 . Hepe07g0039 Mch10g0037 . . . . . . . . . . . Cone15ag0001 . . . Cme06g01169 . . Bda06g00795 . . . . Bma12g01221 . . . Cma16g00031 . Car16g00029 . . . . . . . . . . Cla05g00987 Cam05g1078 Cec05g1086 Cco05g1080 Clacu05g1072 Cmu05g1022 Cre05g1096 . Csa03g01965 . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bma03g00501 . 71 377 Sulfurtransferasese/Rhodanese AT1G79230 78.2 2.0e-146 515.4
Bma03g00501 . 59 323 Sulfurtransferasese/Rhodanese AT1G16460 73.2 2.4e-113 405.2
Bma06g01161 . 1 430 Sulfurtransferasese/Rhodanese AT4G01050 52.4 4.6e-121 431.8
Bma04g00466 . 34 229 Sulfurtransferasese/Rhodanese AT2G42220 73.5 3.9e-83 304.7
Bma12g01059 . 1 236 Sulfurtransferasese/Rhodanese AT4G24750 71.2 3.0e-101 365.2
Bma07g00284 . 2 184 Sulfurtransferasese/Rhodanese AT5G19370 64.9 9.7e-63 237.3
Bma13g01072 . 117 468 Sulfurtransferasese/Rhodanese AT5G55130 72.2 2.3e-151 531.9
Bma12g01221 . 37 249 Sulfurtransferasese/Rhodanese AT4G27700 68.5 5.7e-76 280.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011827 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 30
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma12g01221 Bma_Chr12 FPKM 39.035812 41.962154 3.090666 2.464792 11.212333 9.782367 10.682919 16.129639 15.864782 14.878724