Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma12g01225 ATGGAATCCTTATGCTCACCCATTCTGCTCTTACCCTTCGTCGCTGCCCTGTTTTGGACTTTCCTCCGCCTTCTCCCCACCGCCTCTCGGCCGGAGAAAAGCGGTGGAGAAGTCCAGAAGCGTCCTCCCGGTCCTCCATGCCTTCCCATCCTCGGAAACATAGGATTTCTTCCTCACAGAGCGCTAAATAGCCTCGCCAAAACCTACGGTCCTATCATGTCTATACAGCTCGGAAGAGTTCCGGCACTCGTCGTCTCGTCTCCTGAAGCAGCGGAGCAGTTTCTGAAGGCCTACGATGCAACCTTCGCTTGCCGGCCGAGGATGGAGGCCCCCGATCAAATGACGTACGGAAGCAAGGGAATGATCTTTACGCATTACGGTCCTTACTATCGAGGCGTGAAGAAGATATGCCATTCCAATCTTCTGAGCAGATCTAAAGTCGACGAGATGAAGAGTATGAGGAAAGAGGAGGTGGCGATATTGATAGAGAAGCTCAGAAGGGCAGCAATGGCGGATAAGGTTGTGAATCTGAGCGCAAATGTGACTGAACTGATCGAGAACATGACTTTCAGAATGGTTTTAGGGAAGAAGAAGGACGAACGATTCGATTTGAGAGAGATTGTCAGAGAAGTTATCAAATTAACAGGAGCTATCAATATTGCTGACTACCTCCCAACTCCTCGCTTTTTGGATATGCAGAGTATGAGGAAAGAGGAGGTGGCGATATTGATAGAGAAGCTCAGAAGGGCAGCAATGGCGGATAAGGTTGTGAATCTGAGCGCAAATGTGACTGAACTGATCGAGAACATGACTTTCAGAATGGTTTTAGGGAAGAAGAAGGACGAACGATTCGATTTGAGAGAGATTGTCAGAGAAGTTATCAAATTAACAGGAGCTATCAATATTGCAGACTACCTCCCAACTCCTCGCTTTTTGGATATGCAGGGACTGAGAAAGAGACTGAAGAGAATAACCAGAGAGATAGAAAATATGTTAGAGACGATCATCGAAGAACACCAAGAAAAATCTTCTCACGGGATCGAAGAAGAGAAACCGAGCGACTTCATTGACAGTTTGTTGATTTCGATGATTGAACAGCCCATGAATCCTGAGGATCGTGCATCCATGATCGACAGAGAAAACGTCAAATCAGTGGCTTTAGAGATTATTGCCGCTGCAATTAGTACTTCACCTACAGTGATTGATTGGACCTTGTCGGAGCTTCTCCGACATCCAAGGGTAATGAAACTTGCTCAACAAGAGCTGCAGAACGTCGTCGGAATGGACCGTATGGTGGAGGAAACAGACTTGCCGAAGCTTTCTTACATGGAAATGGTACTGAAAGAGACTTTTAGACTAAACCCAATTGCTCCTCTTCTCATACCTAGAGAATCCATGGAGGAAACAACTATCAATGGCTATTTCATCCCCAAGAAAACTAGGGTTTTCGTCAATACTTGGGCCATCGGAAGAGACCCAAAAGTTTGGTCGGAGAATGTTCTGCAGTTTTACCCAGAAAGATTTCTTGAAAACACTGTCAACATGATCGGGAGAGACTTCCAGTTCATGCCGTTCGGAGCTGGCCGGAGAGGGTGCCCGGGAATCAACGTGGGATTGATGACCGTGAAGTATGCTCTTGCTCAATTATTGCATTGCTTTAACTGGAATCTTCCCGCTGGCGTTCTCCCGGAAGACGTAGATATGAGTGAAAAGTATGGCGTTGCAATGACAAGAGCTAAGCCACTGTTTGCCATACCAACCAATCGCCTCCCTTGTTTGTCTACCTTGTAA 1791 46.68 MESLCSPILLLPFVAALFWTFLRLLPTASRPEKSGGEVQKRPPGPPCLPILGNIGFLPHRALNSLAKTYGPIMSIQLGRVPALVVSSPEAAEQFLKAYDATFACRPRMEAPDQMTYGSKGMIFTHYGPYYRGVKKICHSNLLSRSKVDEMKSMRKEEVAILIEKLRRAAMADKVVNLSANVTELIENMTFRMVLGKKKDERFDLREIVREVIKLTGAINIADYLPTPRFLDMQSMRKEEVAILIEKLRRAAMADKVVNLSANVTELIENMTFRMVLGKKKDERFDLREIVREVIKLTGAINIADYLPTPRFLDMQGLRKRLKRITREIENMLETIIEEHQEKSSHGIEEEKPSDFIDSLLISMIEQPMNPEDRASMIDRENVKSVALEIIAAAISTSPTVIDWTLSELLRHPRVMKLAQQELQNVVGMDRMVEETDLPKLSYMEMVLKETFRLNPIAPLLIPRESMEETTINGYFIPKKTRVFVNTWAIGRDPKVWSENVLQFYPERFLENTVNMIGRDFQFMPFGAGRRGCPGINVGLMTVKYALAQLLHCFNWNLPAGVLPEDVDMSEKYGVAMTRAKPLFAIPTNRLPCLSTL 596
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 45133014 45155865 - Bma008588.1 Bma12g01225 92651

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma12g01225 596 Coils Coil 314 341 - -
Bma12g01225 596 SUPERFAMILY Cytochrome P450 42 235 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Bma12g01225 596 PRINTS E-class P450 group I signature 66 85 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Bma12g01225 596 PRINTS E-class P450 group I signature 532 555 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Bma12g01225 596 PRINTS E-class P450 group I signature 401 427 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Bma12g01225 596 PRINTS E-class P450 group I signature 522 532 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Bma12g01225 596 PRINTS E-class P450 group I signature 444 462 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Bma12g01225 596 PRINTS E-class P450 group I signature 90 111 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Bma12g01225 596 PRINTS E-class P450 group I signature 381 398 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Bma12g01225 596 SUPERFAMILY Cytochrome P450 232 589 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Bma12g01225 596 PRINTS P450 superfamily signature 523 532 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Bma12g01225 596 PRINTS P450 superfamily signature 392 409 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Bma12g01225 596 PRINTS P450 superfamily signature 445 456 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Bma12g01225 596 Gene3D Cytochrome P450 234 584 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Bma12g01225 596 Pfam Cytochrome P450 231 577 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Bma12g01225 596 Pfam Cytochrome P450 42 225 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Bma12g01225 596 PANTHER CYTOCHROME P450 FAMILY PROTEIN 37 234 - -
Bma12g01225 596 PANTHER CYTOCHROME P450 FAMILY PROTEIN 233 591 - -
Bma12g01225 596 Gene3D Cytochrome P450 37 233 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Bma12g01225 596 PANTHER CYTOCHROME P450 93A3-LIKE 37 234 - -
Bma12g01225 596 PANTHER CYTOCHROME P450 93A3-LIKE 233 591 - -
Bma12g01225 596 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 525 534 IPR017972 GO:0005506|GO:0016705
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma12g01225 - - - qsu:111992257 419.853
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma12g01225 Bma-Chr12:45133014 Bma15g01013 Bma-Chr15:39862733 4.60E-46 dispersed
Bma12g01225 Bma-Chr12:45133014 Bma12g01226 Bma-Chr12:45188885 4.86E-118 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g340 . . Bda06g00800 . . . . Bma12g01225 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000178 4 7 3 4 2 4 0 6 3 8 4 3 4 9 9 8 4 6 2 6 11 7 2 9 10 11 15 7 7 6 181
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma12g01225 Bma_Chr12 FPKM 3.587191 3.690659 1.742927 2.836622 1.629066 2.177156 1.594747 4.723132 4.470213 4.674261