Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma12g01227 ATGGCGCTCACGATTGTCAATGGCGGTGGCCGATGTAGTGACGCCGGGATCCTCTACAGGAGGCCCAGACAAACCCCGTCTGCCCAACTCCCCTTCCGTCAGCGCATTCTCTCTCCGGCTACTCACAGAAACCGGCCGCTCCACGTAGTTCGAGCCAAGAAGCTTTCGTCGCGAACCGGTCGGTTCGATAGCAAGAAGCGGAGGGGGTCGACGACGAAGACCGACCAGGAAGAGGAAGGAGAAGATGGTGATGAGAACCGGACGGGTGAAATGGACAGGAGGGGTGAGCCACCGGAAGATGTTCGGAAAATTGAAAACGTGGGAATTGTTTTCGACGATGAGAAGACCATGCCGGAGCTCCCCGGCGAGGAGCCGGATTTCTGGGAGGGTCCGCAGTGGGACGCCCTCGGCTTTTTTGTTCAGTATTTATGGGCCTTCGGCATCGTCTTCGCGCTGATTGCATGCGGAATTGCTGTGAGTACATACAATGAAGGAGCTACAGATTTCAAACAAACTCCGGCCTACAAAGAGTCATGTTGA 540 55.74 MALTIVNGGGRCSDAGILYRRPRQTPSAQLPFRQRILSPATHRNRPLHVVRAKKLSSRTGRFDSKKRRGSTTKTDQEEEGEDGDENRTGEMDRRGEPPEDVRKIENVGIVFDDEKTMPELPGEEPDFWEGPQWDALGFFVQYLWAFGIVFALIACGIAVSTYNEGATDFKQTPAYKESC 179
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 45204142 45204887 + Bma008590.1 Bma12g01227 92653

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma12g01227 179 MobiDBLite consensus disorder prediction 86 101 - -
Bma12g01227 179 PANTHER AT-RICH INTERACTIVE DOMAIN PROTEIN 1 178 - -
Bma12g01227 179 MobiDBLite consensus disorder prediction 56 76 - -
Bma12g01227 179 MobiDBLite consensus disorder prediction 25 101 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma12g01227 - - - cmo:103494120 199.519
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g333 . . Bda06g00801 . . . . Bma12g01227 . . Cma10g00240 . Car10g00226 . . . . . . . . . . . Cla06g01475 Cam06g1629 Cec06g1691 Cco06g1685 Clacu06g1594 Cmu06g1544 Cre06g2356 . . Cone13ag0289 Cone19ag0274 . . . . . Blo15g00075 . . Bpe07g01031 . . . . Cmo10g00254 . . . . . . Cpe18g00753 . . . . . . . . . . . . . . Lsi06g01338 Csa01g00375 Chy02g02369 Cme02g01753
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011206 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 31
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma12g01227 Bma_Chr12 FPKM 34.900284 36.242683 29.657301 20.213285 26.449829 16.624619 24.353907 30.906656 37.10458 36.735432