Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma12g01232 ATGGCTGTGGGAAGCAAAACCAGAAGCATTCTTGAAGGACTTGTTAGAGAAAGTTCATTCAAATGGTTGATTAGCAATCGGCGTTCTTTCGGGGAAGAATTTGAGGAGTTTGGAAAGTCACCTTCTGCCAGAAAGAATTGGATTTCTGAGCTATCTCCAGCTGCTAATGTAGTTGTCCGGAGATGCTCAAAAATTCTTGGCATTTCTTCTAGTGAACTTCAAGAAAGCTTCAATGCAGAAGCTTTTGATTCTATAAAACATCCATCTAATTACGCAAGGAACTTTTTGGAGTACTGCTGTTTCAGGGCACTTGCTTTATCGACACAAGTTGCTGGTTATTTGACTGATAAAAAATTTCGACGGCTCACATATGACATGATGCTGGCTTGGGAAGCTCCTGCTGCGTGTAACCAACCCTCAATCATGTCTTTGATTTTATCGACCTCCATGGATATCTTTTTACTAGTTGACGAAGAACTAACAGTTGGGTTGGAGGCATTCTCTCGAATTGCTGCAGCAGTTCCTTTAATTGCGAATGTGATTGTAAGTGAAAATCTTTTCAAGGTGCTTACATCATCAGCTGGTGGTAGGCTTAGGTTTGCCATGTATGACAACATTTTCCCATATAAGGCTAATTATTTTCTCTGTAGAGCTATACGGAAAATGAAAAACCAGTCAGAGTCGAATCTTCTTGATGCCGTTCGATCAGCAAGAGGGGAAAAGATTCTAGAGGTTGATGGAACTGTCACAACTCAGCCTGTTCTTGAACATGTAGGAATTTTTATTTGGCCTGGTCGGCTGACTCTGACAGACCATGCGCTTTACTTTGAACCTCTACGTGTTGTTTCCTATGACAAAGCCAAACAGTATGACTTATCAGATGATTTAAATCAAGTTGTAAAACCTGAGTTGACTGGTCCGTTGGGCACTCGACTTTTTGACAAGGGAGTTTCATATAGATCAGTTTCTTTATCAGAACCAGTGATGCTAGAGTTTCCAGAGCTTAAAGGCCATGCACGACGTGATTATTGGCTAGCAATTATCCGGGAAATTTTATATGCTCATAGATTTATAAATACTTACCAGATTAAGGGAGTTCAACGAGATGAAGCCCTCTCAAAGGCGGTTCTTGGAATTCTGCGAGTTCAAGCCATTCGGGATGTTTTTTCTACTACTCCTCTAAGGAGTGAGGCTCTTCTGATGTTCAATCATTGCGATCAACTTCCAGGTGGGGATTTAATACTAGAAACACTAGCACAGATGTCAAACTCCAGAGAGTTTGATCAGACAAATAAATCAATGGCTGGAAGTAGCATGTATTCGATTTCTGCTCTCGACATAATTTCAAACCTAGGGTTTGGTTTGGGATCGACTTCAAATAGTACGAGCGATAATGGGCTTGTTGTGGGTGAGATTGCTGTTGGCACAATGACTACTCTGGAAAGGGCAGTCAAGGAGTCCAAGAGCAATTATGAGAAGGTGGTGCTAGCTCAATCATCTGTCAATGGAGTTAAAGTAGATGGCCTTGATACAAATTTGGTAGTGATGAAGTTCTTTGCAGGAGTTGTTGTCTCCGGTAACTCAATTGGGAAGTGTCTTCTTTCTCTTGCGTATTGGGATGATCCATTGAAGTCTTTGGTGTTCGTTGTGATTTTCAGTTTCATCATTTTGAGGGAATGGCTGAGTTATGCAGTTGCTTTGACACTTGCATTTCTGGCAGTTTTCATCATACTCACTCGATTTTATAACCGGGGGAGGCCCATCGACAAAGTTAAGGTTATATCCCCTCCCCCCATGAACACAATGGAGCAGCTTTTGGCTGTTCAGAACGTGATTTTACAAGCCGGGCAGGTTATCCAAGATGGTAACATAGTTCTTCTAAAGCTACGTGCCTTGTTGCTGGGCATTTTCCCTCAGGTTTTTCTCATTTTCTCCATGCAAATCTCTCTCTCTCTCTTCTGCTTATCGGGTTTTTGTGTAATCGATCAGGCATCGGAGAAATTTGCATTTGCTCTGCTACTAGTGGCCTCGATGGTGGCCTTTGTACCGAGCAAGTACATAATGTTGGCAGTGTTCATGGAGATTTTCACTAGGTATTCGCCTGCGAGAAAAACCAGCGTGGAGAAATGGATGAGGAGGTTGAGAGAATGGTGTGGGAGGAGGAGCTTCAAATCGGAAGAGGCTTTAGAATTTCTGTACCAGAGAGTTGTTCTGAATCCTTTTCTTCCATATTCAGTGTCTTTTATTTTGGTTGTTTGGGCGATTGAGCGATGGGTTATCTCTTTCTCCAATTGGCTCCCCCTTGCCTTTGCAGTATGGGCCACCGTTCGGTATGGAAATTATCAACGCCACGTGCTCACCGAAGACTTGACTAAAAAGTGGAATCGAATCATCCTGGAAACTTCGTCGATAACAACAGTGGAGCATTGTGAATGGCTGAATAAACTGTTGATGGAAGTATGGTCCAGCTATATGAACCCAAAACTTTCGATTAGGTTCTCCTCCATCATTGAGAAAAAACTAAAGCAACAAAAATCGAGACTTGTTAAAGGAATTGATCTGCTAGAAGTTTCTCTTGGCTCACATCCTCCTATCTTGGGTCTTCATGGTACTCAATGGTCAACTTGTGGTAATCAGAAAATCATGCGTTTAAATTTCGATTGGGATACAAAAGAAATGCGTATTTTGTTACAAGCTAAGCTAGGCAGGCCGTTTATTGGAACCGCACGGATTGTTATCAATAGCCTGCACATAAAGGGTGATCTGCTTTTGAGGCCAATTCTGGATGGAAAAGCGATACTTTATTCATTTGTGTCCACTCCTGATGTACGAATTGGAGTTGCTTTTGGAAGTGGTGGAAGCCAATCACTACCTGGCACTGAGCTGCCTGGTGTATCGTTTTGGTTGGTTAAAATTTTTACCGACACTTTGGTTAAGACAATGGTTGAACCTCGGCGACGATGCTTTTCGTTACCAGCTGTAGACTTGAGAAAAAAAGTTGTTGGCGGTGTTATACATGTGACTGTTGTATCTGCCAGTAACCTTTCGAGAAATGACTTGAGAGGAAGCCCATCAAAGCAGCATACTAATTCTTTGAATGGTACACCAGAGGAGCAGTTTACGAAGAAAAATCTCGAGACATTTGTTGAGGTTGAACTTGGGGATCTAAGTCGGAGAACTGGTACGAGATCAGGCTCGAGTCCTGTATGGGACTCGACATTTAACATGATTTTGCATGAAGAAACGGAAATTCTTCGATTTCATCTTTACGAGTCCAATTCAAACTATGTGAAATATGACTATCTAACCAGTTGTGAGATTAAGATGAAGTATGTTGCAGACGATTCAATGACAATTTGGGCGATAGGAAATGGCTCTGGTGTTATTGCAAAACATGCCGAGTGTTACGGAAAAGAAACCGAAATTGTTGTTCCATTCGAAGGGGTCAGTTGTGGGGAGTTGACAGTAAGGCTTGCCTTGAAGGAATGGCAATTTTCTGGAGATTCGTATGGCTTGAACCGTCTTCGTTTAAGCTCCCAGCAATTCCTCTACGGATCATCAAATTTTCTTCCAAGAACTGGAAGAAAAATTAACATAACTGTTGTGGAGGGAAAGGATCTTATTGTGAAAGACAGATCAGGAAAATCTGTTCTATATGTTAAGATGCAATACGGCAAGGTTCTCCAGAAAACAAAGACTGCTCAATCTTATAATCCTATTTGGAATCAGATATTTGAATTCGACGAGATAGGAGGTGGTGAATACCTTAAGATAAAGTGTCATAGTGAAGATGTCTTTTACGATGATAGTATCGGCAGTGCTCGAGTAAATTTGGAAGGACTGGTAGACGGATTAATTCGAGATGTATGGATTCCCCTCGAGAAAGGTTCAAGCAATGGCTGGATTGAACTTGTTCTAATTGAAGCAAAAGATCTTGTAGCAGCTGATCTCAGGGGAACAAGTGATCCTTACGTGAGGGTTCATTATGGAAGCTTGAAGAAAAGAACTAAGGTTGTGTACAAAACTCTGAATCCCCATTGGAATCAGACCTTGGAGTTTGCTGATGATGGAAGCCCTCTAGTGTTATATGTGAAAGACCATAATGCTCTATTACCCACATCAAGTATAGGGAATTGTACAGTAGAATATCAAAGTTTGCCTCTTAATCAAATGTCAGATGAGTGGATACCCCTTCGAGGGGTGAAAAGTGGTGAAATTCACGTCCAAATCACGAGAAAAGTTTTCAAAGTAGATACCCGACTCGGCTTGGAGTCTCGACTATCCATCACCAAAGCTCATCAAATTTCTGGTCAGATGAAGCAAACGATCAGGAGGTTTCGAACGCTGATCGAGGACGGCAACGAAGAACTTTCAATGGCATTGACGGAGTTGGAAGGGGCGGAGGAGATGCAAAGGGACTATATGTTGCAGCTCGAAACCGAGCAAATGCTTCTGCTAAACAAAATGAAGGAGATTGGTGAGGAGATTTTCAATTCATGTTCATGTTTAAGTACAAAATCTTCTCCCAATTGA 4533 41.78 MAVGSKTRSILEGLVRESSFKWLISNRRSFGEEFEEFGKSPSARKNWISELSPAANVVVRRCSKILGISSSELQESFNAEAFDSIKHPSNYARNFLEYCCFRALALSTQVAGYLTDKKFRRLTYDMMLAWEAPAACNQPSIMSLILSTSMDIFLLVDEELTVGLEAFSRIAAAVPLIANVIVSENLFKVLTSSAGGRLRFAMYDNIFPYKANYFLCRAIRKMKNQSESNLLDAVRSARGEKILEVDGTVTTQPVLEHVGIFIWPGRLTLTDHALYFEPLRVVSYDKAKQYDLSDDLNQVVKPELTGPLGTRLFDKGVSYRSVSLSEPVMLEFPELKGHARRDYWLAIIREILYAHRFINTYQIKGVQRDEALSKAVLGILRVQAIRDVFSTTPLRSEALLMFNHCDQLPGGDLILETLAQMSNSREFDQTNKSMAGSSMYSISALDIISNLGFGLGSTSNSTSDNGLVVGEIAVGTMTTLERAVKESKSNYEKVVLAQSSVNGVKVDGLDTNLVVMKFFAGVVVSGNSIGKCLLSLAYWDDPLKSLVFVVIFSFIILREWLSYAVALTLAFLAVFIILTRFYNRGRPIDKVKVISPPPMNTMEQLLAVQNVILQAGQVIQDGNIVLLKLRALLLGIFPQVFLIFSMQISLSLFCLSGFCVIDQASEKFAFALLLVASMVAFVPSKYIMLAVFMEIFTRYSPARKTSVEKWMRRLREWCGRRSFKSEEALEFLYQRVVLNPFLPYSVSFILVVWAIERWVISFSNWLPLAFAVWATVRYGNYQRHVLTEDLTKKWNRIILETSSITTVEHCEWLNKLLMEVWSSYMNPKLSIRFSSIIEKKLKQQKSRLVKGIDLLEVSLGSHPPILGLHGTQWSTCGNQKIMRLNFDWDTKEMRILLQAKLGRPFIGTARIVINSLHIKGDLLLRPILDGKAILYSFVSTPDVRIGVAFGSGGSQSLPGTELPGVSFWLVKIFTDTLVKTMVEPRRRCFSLPAVDLRKKVVGGVIHVTVVSASNLSRNDLRGSPSKQHTNSLNGTPEEQFTKKNLETFVEVELGDLSRRTGTRSGSSPVWDSTFNMILHEETEILRFHLYESNSNYVKYDYLTSCEIKMKYVADDSMTIWAIGNGSGVIAKHAECYGKETEIVVPFEGVSCGELTVRLALKEWQFSGDSYGLNRLRLSSQQFLYGSSNFLPRTGRKINITVVEGKDLIVKDRSGKSVLYVKMQYGKVLQKTKTAQSYNPIWNQIFEFDEIGGGEYLKIKCHSEDVFYDDSIGSARVNLEGLVDGLIRDVWIPLEKGSSNGWIELVLIEAKDLVAADLRGTSDPYVRVHYGSLKKRTKVVYKTLNPHWNQTLEFADDGSPLVLYVKDHNALLPTSSIGNCTVEYQSLPLNQMSDEWIPLRGVKSGEIHVQITRKVFKVDTRLGLESRLSITKAHQISGQMKQTIRRFRTLIEDGNEELSMALTELEGAEEMQRDYMLQLETEQMLLLNKMKEIGEEIFNSCSCLSTKSSPN 1510
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 45248292 45259870 - Bma008596.2 Bma12g01232 92658

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma12g01232 1510 MobiDBLite consensus disorder prediction 1018 1037 - -
Bma12g01232 1510 CDD C2 1302 1398 - -
Bma12g01232 1510 Pfam C2 domain 1196 1293 IPR000008 -
Bma12g01232 1510 Pfam C2 domain 1004 1111 IPR000008 -
Bma12g01232 1510 Pfam C2 domain 1302 1398 IPR000008 -
Bma12g01232 1510 ProSiteProfiles C2 domain profile. 1282 1396 IPR000008 -
Bma12g01232 1510 PANTHER PLANT SYNAPTOTAGMIN 736 1505 - -
Bma12g01232 1510 CDD C2 1197 1293 - -
Bma12g01232 1510 ProSiteProfiles Synaptotagmin-like mitochondrial lipid-binding proteins (SMP) domain profile. 806 992 IPR031468 GO:0008289
Bma12g01232 1510 CDD C2 1005 1119 - -
Bma12g01232 1510 PANTHER OS01G0128800 PROTEIN 736 1505 - -
Bma12g01232 1510 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 1195 1302 IPR035892 -
Bma12g01232 1510 ProSiteProfiles C2 domain profile. 986 1121 IPR000008 -
Bma12g01232 1510 SMART C2_3c 1301 1395 IPR000008 -
Bma12g01232 1510 SMART C2_3c 1004 1121 IPR000008 -
Bma12g01232 1510 SMART C2_3c 1196 1290 IPR000008 -
Bma12g01232 1510 Gene3D C2 domain 994 1126 IPR035892 -
Bma12g01232 1510 Gene3D C2 domain 1302 1420 IPR035892 -
Bma12g01232 1510 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 997 1115 IPR035892 -
Bma12g01232 1510 Pfam Plant protein of unknown function (DUF639) 478 644 IPR006927 -
Bma12g01232 1510 Pfam Plant protein of unknown function (DUF639) 661 717 IPR006927 -
Bma12g01232 1510 Coils Coil 1450 1470 - -
Bma12g01232 1510 Gene3D C2 domain 1186 1301 IPR035892 -
Bma12g01232 1510 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 1298 1411 IPR035892 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma12g01232 - - - jre:109004549 1089.33
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bma08g00061 Bma12g01232 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma04g01446 Bma-Chr4:49609437 Bma12g01232 Bma-Chr12:45248292 2.30E-83 dispersed
Bma04g01698 Bma-Chr4:53232014 Bma12g01232 Bma-Chr12:45248292 2.98E-53 dispersed
Bma10g00249 Bma-Chr10:2294821 Bma12g01232 Bma-Chr12:45248292 9.66E-30 dispersed
Bma12g01232 Bma-Chr12:45248292 Bma07g01119 Bma-Chr7:44688414 6.22E-11 dispersed
Bma08g00061 Bma-Chr8:769768 Bma12g01232 Bma-Chr12:45248292 2.43E-67 transposed
Bma12g01232 Bma-Chr12:45248292 Bma03g00894 Bma-Chr3:8758240 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g315 . . Bda06g00807 Bda15g00515 Bpe12g00692 . . Bma12g01232 . . Cma10g00231 Cma11g00277 Car10g00216 Car11g00252 . . Cpe04g01401 . . . . . . . Cla06g01464 Cam06g1617 Cec06g1679 Cco06g1672 Clacu06g1581 Cmu06g1532 Cre06g2344 . . . . . . . . Blo13g00167 Blo15g00069 . . Bpe07g01036 . . Bma08g00061 . . Cmo11g00281 . . . . . Cpe18g00761 . . . . . . . . . . . . . . Lsi06g01327 Csa01g00389 Chy02g02358 Cme02g01736
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0019480 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 4
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma12g01232 Bma_Chr12 FPKM 13.284091 16.352934 3.703483 3.539908 17.299866 17.024584 16.191256 13.229031 13.809719 13.565347