Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma12g01234 ATGGCGACTCCATTTTCGGGATTGCAGCTCAGAGACGGAGGCGGAGTTGCAGTGCTGTCGAATTCAGTGAATAAGGTAGATGCGTCACCGACTCCGTCGTCTTCAAATGGTGGTTGTTTGAGGAGCTCCGAGCCTAAGTCTCCTATTGCACTTGACATTCGTGTGAAGAATGTAGCTCAAACATACTCTCTCGAGCACAAAGGAGAAAGCAACCTTTTTGATCATCTTTTTGAGCTCCTTAATTCAAGTACACAAGATGATGAATGCTTATCTCGGGAGTTGGCGTCTTGTACCAGAGCATTAAGGACATCAATTAGCCAACACATGGCCAAGGAAGAAGAGCAGGTCTTTCCCTTGCTCATGGAGAAGTTCTCTCTTGATGAGCAAGCGTCTCTGGTCTGGCAATTATTTTGCAGCATTCCCGTGAATATGATGGCTGAATTTCTTCCTTGGCTAGCATCATCTATTTCACCAGATGAATCTCAGGATCTGCGGAAGTGTTTGAGCAAGATAGTTCCCAAGGAAAAGCTTCTTCAACAGGTCATATTTGCGTGGATGGAAGGGAGAAACGGTGCTATCGTTGCTGAAAGTTGCATAGATGATTCTTTTGGTGGATGTTGTGTTGATACTAGCATTTGCATATCATCCCAGGAAACAGAAAAAGTAAAGAGAGCTTGTGTAGAGATGACTACTGGAAAAAGGAAACATATTGACTTTAGTGATGACACTACTGATGTCATGGAGACACATCCAATAAATGAAATATTGCTTTGGCACAATGCGATTAAAAAGGAGTTGACTGAGATAGCTGAAGAGGCTAGGAAAATACAACTTTCTGGAAATTTTGATAATCTTTCAGCCTTCAATGAGAGACTGCATTTCATTGCTGAAGTTTGTATCTTTCACAGTATTGCTGAAGACAAGGTTATCTTTCCAGCAGTAGATGGAGAGTTATCCTTTCTTCAGGAGCATGCTGAAGAAGAAAGTCAATTTAATGAATTCAGGTCGCTGATGGAAGAAGGCATTCAAAGTGATGGATCAGTGTCTAATTCAACAGCTGAATTTTACTCAAAGTTGTGTTCGCTTGCCGATCAAATTATTGATACAATTCAGAGGCACTTCAACAATGAGGAACTTCAGGTTCTTCCGCTTGCTCGAAAGCACTTTAGCCTCAAACAACAGCGGGAACTTCTGTATCGTAGCTTGTGCATGATGCCCCTGAAATTAATTGAGCGTGTCTTGCCATGGCTGATTGCGTCATTATCAGAAGATGAAGCTGGAAATCTTCTGAAAAACATCCAATTGGCAGCTCCGACATCTGATACTGCTTTAGTGGCACTCTTTTCTGGCTGGGCTTGCAAGGCCCGGAACCGAGGGTTATGCTTGTCTTCAAGAGGGACTGGTATCTGTCCAGTAAAAAGGCTTATTGACATTGAAGAAAATGTTGTTCCATCATTTTGTTCACATGCTTCTGCATTACCTCCAAGAGATAGTAAATCATCAAGTAAAGAAAATAACTTTGAAAGGCCGGCTAAACGAAATGTCTCAGTTTCGTGCAAAAATTGTGATGCCTCTAGTCTCTTAGAGGCTGCTAATTTCCAGCATCCTTGCTGTGGTGATGAATCTTGTTGTGTCCCAGGTTTAGGAGTAAATAGCAATAATCTAGGCTTGAGTTCTCATTTTGCGACAAAGTCTTTGTGTTCTTTATCTCCCAGCTCTGGGGCCCCTTCTCTCAACTCGAGTCTTTTCTCATGGGAAACTGATATTAACTTTTCTGACATTGAGGCTTCAGGACGACCAATTGATACTATTTTTAAGTTTCATAAAGCTATAAGGAAAGACTTGGAATATTTAGATGTTGAATCTGGAAAGCTTAATCAATGTGATGAGACATTCCTACGGCAATTTAGTGGGAGATTTCGCCTGCTATGGGGATTGTATCGAGCTCATAGTAATGCTGAAGATGATATAGTGTTCCCTGCTCTAGAATCCAAAGAGGCATTGCACAATGTTAGTCACTCGTACACACTGGACCATAGACAGGAGGAAAAGTTATTTGAAGACATTGCAAGTGTTCTTTTGGAACTTTCTCATCTACATGGAAACTCCTCTTTGGATATTGATTCATCTGGAAATCAGCTTGGAAAGCATGTCGAGCTAGCTACAAAGCTTCAAGGAATGTGCAAATCCATAAGAGTGTCACTAGATCAGCATATTTTCAGGGAGGAACTTGAGCTATGGCCATTGTTTGGAAAACATTTCTCTGTGGAGGAGCAAGACAAAATAGTTGGCTGCATCATTGGAACAACAGGTGCAGAAGTACTCCAATCAATGTTACCATGGGTAACTTCAGCACTGACACAGGACGAACAAAATATAATGATGTATACTTGGAAACAAGCCGCAAAGAATACCATGTTCAATGACTGGCTCAATGAATGTTGGAAAGGAATTGAGGCATCTACTTTACGTACGGGGACATTGGAAGCTAATTTTGCTCAAAAAGGTGTTGAGATTCGAGAAGGCTTGGATCAATGTGATCAGATGTTCAAGCCTGGCTGGAAGGATATTTTTCGAATGAATCAAAATGAGATTGAATCAGAGATTAGAAAGGTCTACCAGGATTTGACTCTTGATCCAAGAAGAAAGGCATATCTTGTCCAGAATCTTATGACCAGTCGCTGGATTGCCACCCAACAGAAGCAAACAGAAATTACGGTGGCAAGTTCTAATATTGAAGATGTAGCAGGACGTTCACCATCGTACTGTGACCCTGATAAAAGTAAATTTGGGTGTGAGCATTACAAAAGAAACTGCAAACTCCGTGCTGCTTGCTGTGGCAAGTTGTTTACATGCCGGTTTTGTCATGATAATGTTAGCGACCACTCTATGGATAGGAAAGCAACCTCTGAGATGATGTGCATGCGCTGTTTGACAATTCAGGCTGTGGGGCCAACATGCTCAACTCCTTCATGCAATGGATTTTCAATGGCAAAATACTATTGCAATATATGCAGATTTTTCGATGATGAAAGGTCAACCGTCTATCATTGCCCATTTTGCAACTTATGCCGTCTGGGGAGAGGTCTTGGACATGACTTTTTTCACTGCATGACGTGCAATTGTTGTCTGGGGATAAAGATTGTGAACCACAAGTGTCTGGAAAAAAGTTTAGAAACAAATTGTCCTATCTGCTGTGATTTTCTGTTCACTTCCAGCGCAACAGTCAGAGCTCTACCCTGTGGACATTACATGCATTCAGCTTGCTTTCAGGCATACACGTGTAGCCATTATACCTGTCCAATTTGCAGCAAGTCTTTAGGAGACATGGCGGTTTATTTCGGCATGCTTGATGCTCTGTTGGCTGCCGAAGACCTTCCACACGAGTACAGGGATCGTTGTCAGCAGGATATACTGTGCAACGACTGTGATAGGAAGGGGACGTCTCGATTTCATTGGTTATATCACAAGTGCGGACTTTGTGGTTCATACAACACCCGGGTCATCAAAAATGAGACTATAAATGTAGATTGCTCAGAATCCAATCACTGA 3552 41.95 MATPFSGLQLRDGGGVAVLSNSVNKVDASPTPSSSNGGCLRSSEPKSPIALDIRVKNVAQTYSLEHKGESNLFDHLFELLNSSTQDDECLSRELASCTRALRTSISQHMAKEEEQVFPLLMEKFSLDEQASLVWQLFCSIPVNMMAEFLPWLASSISPDESQDLRKCLSKIVPKEKLLQQVIFAWMEGRNGAIVAESCIDDSFGGCCVDTSICISSQETEKVKRACVEMTTGKRKHIDFSDDTTDVMETHPINEILLWHNAIKKELTEIAEEARKIQLSGNFDNLSAFNERLHFIAEVCIFHSIAEDKVIFPAVDGELSFLQEHAEEESQFNEFRSLMEEGIQSDGSVSNSTAEFYSKLCSLADQIIDTIQRHFNNEELQVLPLARKHFSLKQQRELLYRSLCMMPLKLIERVLPWLIASLSEDEAGNLLKNIQLAAPTSDTALVALFSGWACKARNRGLCLSSRGTGICPVKRLIDIEENVVPSFCSHASALPPRDSKSSSKENNFERPAKRNVSVSCKNCDASSLLEAANFQHPCCGDESCCVPGLGVNSNNLGLSSHFATKSLCSLSPSSGAPSLNSSLFSWETDINFSDIEASGRPIDTIFKFHKAIRKDLEYLDVESGKLNQCDETFLRQFSGRFRLLWGLYRAHSNAEDDIVFPALESKEALHNVSHSYTLDHRQEEKLFEDIASVLLELSHLHGNSSLDIDSSGNQLGKHVELATKLQGMCKSIRVSLDQHIFREELELWPLFGKHFSVEEQDKIVGCIIGTTGAEVLQSMLPWVTSALTQDEQNIMMYTWKQAAKNTMFNDWLNECWKGIEASTLRTGTLEANFAQKGVEIREGLDQCDQMFKPGWKDIFRMNQNEIESEIRKVYQDLTLDPRRKAYLVQNLMTSRWIATQQKQTEITVASSNIEDVAGRSPSYCDPDKSKFGCEHYKRNCKLRAACCGKLFTCRFCHDNVSDHSMDRKATSEMMCMRCLTIQAVGPTCSTPSCNGFSMAKYYCNICRFFDDERSTVYHCPFCNLCRLGRGLGHDFFHCMTCNCCLGIKIVNHKCLEKSLETNCPICCDFLFTSSATVRALPCGHYMHSACFQAYTCSHYTCPICSKSLGDMAVYFGMLDALLAAEDLPHEYRDRCQQDILCNDCDRKGTSRFHWLYHKCGLCGSYNTRVIKNETINVDCSESNH 1183
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 45293119 45302102 - Bma008600.1 Bma12g01234 92660
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma12g01234 1183 CDD Hr-like 602 748 - -
Bma12g01234 1183 Gene3D - 1134 1179 - -
Bma12g01234 1183 SUPERFAMILY Zinc hairpin stack 998 1055 IPR037275 -
Bma12g01234 1183 Gene3D nmb1532 protein domain like 595 800 - -
Bma12g01234 1183 SUPERFAMILY RING/U-box 1061 1107 - -
Bma12g01234 1183 CDD RING-H2_Pirh2 1061 1104 - -
Bma12g01234 1183 Pfam Hemerythrin HHE cation binding domain 250 385 IPR012312 -
Bma12g01234 1183 Pfam Hemerythrin HHE cation binding domain 600 749 IPR012312 -
Bma12g01234 1183 ProSiteProfiles Zinc finger RING-type profile. 1062 1104 IPR001841 -
Bma12g01234 1183 SMART ring_2 1062 1103 IPR001841 -
Bma12g01234 1183 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 50 1178 - -
Bma12g01234 1183 Pfam Ring finger domain 1061 1103 IPR001841 -
Bma12g01234 1183 CDD Hr-like 254 383 - -
Bma12g01234 1183 Pfam CHY zinc finger 932 1007 IPR008913 GO:0008270
Bma12g01234 1183 Pfam Zinc-ribbon 1109 1167 IPR039512 -
Bma12g01234 1183 SUPERFAMILY CHY zinc finger-like 927 988 IPR037274 GO:0008270
Bma12g01234 1183 ProSiteProfiles Zinc finger CHY-type profile. 925 994 IPR008913 GO:0008270
Bma12g01234 1183 ProSiteProfiles Zinc finger CTCHY-type profile. 997 1061 IPR017921 -
Bma12g01234 1183 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1055 1106 IPR013083 -
Bma12g01234 1183 Gene3D nmb1532 protein domain like 255 401 - -
Bma12g01234 1183 Gene3D nmb1532 protein domain like 48 138 - -
Bma12g01234 1183 MobiDBLite consensus disorder prediction 24 42 - -
Bma12g01234 1183 PANTHER CHY ZINC FINGER PROTEIN 50 1178 - -
Bma12g01234 1183 MobiDBLite consensus disorder prediction 24 44 - -
Bma12g01234 1183 CDD Hr-like 50 118 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bma08g00059 Bma12g01234 CCT
Bma03g00898 Bma12g01234 CCT
Bma08g00059 Bma12g01234 ECH
Bma03g00898 Bma12g01234 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g02148 Bma-Chr1:77978920 Bma12g01234 Bma-Chr12:45293119 8.99E-50 transposed
Bma02g00879 Bma-Chr2:47092353 Bma12g01234 Bma-Chr12:45293119 2.40E-40 transposed
Bma08g00059 Bma-Chr8:750624 Bma12g01234 Bma-Chr12:45293119 2.81E-19 transposed
Bma11g00198 Bma-Chr11:1760388 Bma12g01234 Bma-Chr12:45293119 1.91E-52 transposed
Bma12g01010 Bma-Chr12:42183947 Bma12g01234 Bma-Chr12:45293119 9.15E-11 transposed
Bma12g01234 Bma-Chr12:45293119 Bma03g00898 Bma-Chr3:8870137 4.00E-97 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma12g01234 K16276 - mnt:21402857 1762.66