Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma12g01235 ATGGGGACTGGAACACTCGTGGACGGTGCTCGTCGGTGGTTTGAACGTCGCGTTTCTTCTTCTGCTGCTATAACTTCTGATTTAAATACCGATTGTCTCCCCATTGCTAAAAGCAATGTTACGAATAATGAACCCAATTATGGTGATGATGGTGGCAACAGAACCCATTTGTTTATGACCGACTTTCGCGGCCAATCGTCCACCACAACCGAAACCAAAGCAAAACGAAACCACGTTCATCTCGACGAAGAAATTATTGTTGCGAAAGTCGAAGAAGACAGTGGTGTCTCAGGCTCGACGCTTATCAAAGTACCTAACCGGACCTACATTAAAATTACAGGCGCTGCTGCCACTGCCATGGGTTCCCTCAAGAAGGGTGGGTCAGAAGCAGAGTTCTTCACCGAGTATGGAGAAGCAAGTCGATACCAAATTCAAGAAATAATAGGCAAAGGAAGCTATGGAGTTGTTGGTTCTGCAGTGGATTCCCACACAGGTGAAAGGGTAGCCATTAAGAAAATCAACGATGTCTTTGAGCATGTCTCGGATGCCACAAGGATTCTAAGAGAAATCAAACTCCTTAGGTTGCTTCGCCATCCAGACATCGTAGAAATAAAGCATATTATGCTTCCTCCTTCTCGAAGAGAATTCAGCGATATATATGTTGTGTTTGAGTTAATGGAATCTGACCTTCATCAAGTAATTAAGGCAAATGATGATCTTACTCCAGAGCATCATCAATTCTTTTTGTACCAGCTTCTTCGGGGTTTGAAGTATACACATAGTGCTAATGTGTTTCATCGTGATTTAAAGCCTAAAAACATTCTTGCTAATGCTGACTGCAAATTAAAGATTTGCGACTTTGGGCTTGCTCGCGTATCTTTCAATGATGCCCCTTCTGCTATTTTCTGGACCGATTATGTCGCTACACGTTGGTATCGTGCTCCTGAACTATGTGGTTCATTTTTCTCGAAATATACTCCTGCGATTGATATTTGGAGCATAGGATGCATATTTGCAGAAATGCTAACAGGAAAGCCACTTTTTCCCGGGAAAAATGTTGTGCACCAATTGGATCTGATGACTGATTTGCTAGGCACTCCATCACTGGAATCCATTGCCAGGATTCGGAATGAAAAGGCTAGAAGGTATCTTGGTAATATGCGGAGAAAACCGACAGTTCCTTTTTCCCACAAGTTCCCCTATGCTGATCCGTTGGCTCTTCGTTTATTGGAGCGGCTACTTGCATTTGACCCTAAAGATCGTCCGACAGCAGAAGAGGCGTTAGCTGATCCCTACTTCCGAGGTCTGGCCAATGTGGACAGAGAACCATCGACTCAACCTATTTCAAAACTTGAGTTTGAATTTGAGAGGAGGAAACTGACAAAAGATGATGTTAGAGAATTAATCTATAGGGAGATTTTAGAGTATCATACTCAGATGCTACAAGAATATCTCCGTAGTGGAGATCAAACTAGCTTTATGTACCCCAGTGGCGTTGATCGGTTTAAGCGTCAATTCGCACATCTAGAAGAGCACTATGGTAAAGGTGAGAGAAGCACTCCACTTCAAAGGCAACATGCTTCCTTACCCAGAGAGCGGGTTTGTGCACCGAAAGACGATACAGCTGAAGAAAGGGATGATTTGGAAAAGAGAGTTGGTGCCTATGTTGCTAATACTCTCGACAGTCCTCGAAGATCACAAAATGGGTCAGAAAATGACAACACTCTAGCGCAAGAAGCACATACGAAATCTAACTTCAGTGCTCGTAGTCTACTGAAAAGTGCCAGCATTAGTGCATCCAAATGCATAGTCGTGAAATCAAGAATCGAAAATGAGGAGCCAATCGACGAGGCTAAGGACGAGGCAGTCGACGGGTTGACCCAAAAAGTTGCAGCCCTTCATGCATGA 1908 43.71 MGTGTLVDGARRWFERRVSSSAAITSDLNTDCLPIAKSNVTNNEPNYGDDGGNRTHLFMTDFRGQSSTTTETKAKRNHVHLDEEIIVAKVEEDSGVSGSTLIKVPNRTYIKITGAAATAMGSLKKGGSEAEFFTEYGEASRYQIQEIIGKGSYGVVGSAVDSHTGERVAIKKINDVFEHVSDATRILREIKLLRLLRHPDIVEIKHIMLPPSRREFSDIYVVFELMESDLHQVIKANDDLTPEHHQFFLYQLLRGLKYTHSANVFHRDLKPKNILANADCKLKICDFGLARVSFNDAPSAIFWTDYVATRWYRAPELCGSFFSKYTPAIDIWSIGCIFAEMLTGKPLFPGKNVVHQLDLMTDLLGTPSLESIARIRNEKARRYLGNMRRKPTVPFSHKFPYADPLALRLLERLLAFDPKDRPTAEEALADPYFRGLANVDREPSTQPISKLEFEFERRKLTKDDVRELIYREILEYHTQMLQEYLRSGDQTSFMYPSGVDRFKRQFAHLEEHYGKGERSTPLQRQHASLPRERVCAPKDDTAEERDDLEKRVGAYVANTLDSPRRSQNGSENDNTLAQEAHTKSNFSARSLLKSASISASKCIVVKSRIENEEPIDEAKDEAVDGLTQKVAALHA 635
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 45319995 45325187 + Bma008601.1 Bma12g01235 92661
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma12g01235 635 MobiDBLite consensus disorder prediction 513 549 - -
Bma12g01235 635 CDD STKc_TDY_MAPK 141 477 - -
Bma12g01235 635 Pfam Protein kinase domain 142 433 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bma12g01235 635 Gene3D Transferase(Phosphotransferase) domain 1 228 456 - -
Bma12g01235 635 ProSiteProfiles Protein kinase domain profile. 142 433 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bma12g01235 635 SUPERFAMILY Protein kinase-like (PK-like) 138 438 IPR011009 -
Bma12g01235 635 ProSitePatterns MAP kinase signature. 177 280 IPR003527 GO:0004707|GO:0005524|GO:0006468
Bma12g01235 635 Gene3D Phosphorylase Kinase; domain 1 158 478 - -
Bma12g01235 635 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 101 563 - -
Bma12g01235 635 MobiDBLite consensus disorder prediction 531 549 - -
Bma12g01235 635 SMART serkin_6 142 433 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bma12g01235 635 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 9 101 563 - -
Bma12g01235 635 ProSitePatterns Protein kinases ATP-binding region signature. 148 172 IPR017441 GO:0005524
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma04g01178 Bma-Chr4:31304470 Bma12g01235 Bma-Chr12:45319995 0 dispersed
Bma12g00683 Bma-Chr12:28416798 Bma12g01235 Bma-Chr12:45319995 0 dispersed
Bma12g01235 Bma-Chr12:45319995 Bma14g01598 Bma-Chr14:33078541 0 dispersed
Bma12g01235 Bma-Chr12:45319995 Bma15g00264 Bma-Chr15:2612270 2.59E-116 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
66832 PF00069 Pkinase 9.00E-68 CL0016 Bma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma12g01235 - - zju:107434116 925.235