Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma12g01239 ATGAGTGGAAGCACAAATTCGGCCTCTGGAAATGAGAGATTGAAAGCTGAATGCAACTCTAAGCGGGAGGCTAAGTTTGAAGGTGCTGATGAGATCTCGAAGAAGCTGAAAACTGAAGCTTCTTCGGAATCTACTGGCAGAAACCATGAAGTTGAAAACGGCCGTCTTGGTGGTGACGTGCGCGAGCAAAAGAATGGTTCTGCGATTGTTAAGATGAGTAGAGAAGTGATTTTTGAGATTGAAGCTGATGTGGCTGAGGATAAAGGATCTAGGCATGCTATGGAGGATGCTAGCGTCGTGCTTTTGGATGCAAGCTTGGATTTCCCTGGAAAATTAAGATGTGCTCATTTTGCTGTCTACGACGGACATGGAGGTCGATTAGCGGCAGAACACGCCCAAAAGTATTTACATTTGAATGTGCTCTCATCCGGCTTACCACGTGAGTTGGTGGATGTAAAAGCAGCCAAAAGAGCAATTTTAGATGGTTTTCGAAAGACTGATGAGTCACTTCTTCTAGAAAGTACTGCTGGGGGATGGCAAGATGGTGCTACTGCTGTGTGTGTCTGGATTTTAGGCCAAAAAGTTTTTGTTGCTAATGTTGGGGATGCAAAGGCTGTGGTTGCACGATCACCTGCGGGTACTAATTTGCAAAATCATCCTGAATTTGAAAGTTTCTTAAAGGCTATAGTTTTGACTAGGGAACACAAAGCAATATATCCACAGGAGCGAGCTCGGATTGAGAAGGCTGGTGGTATAGTTAGCTCTAATGGGAGAATACAGGGGCGCCTGGAAGTATCTCGGGCATTCGGAGATCGCCATTTCAAAAAGGTAGGTGTCGTTGCTACCCCAGATATACATTCATTTGACTTGACTGAAAGAGACCATTTTATGATTATTGGTTGTGATGGCCTCTGGGGGGTATTTGGGCCTAATGATGCTGTTGATTTTGTTTGGAAATTGTTGAAGGCAAGACTACTTGATGAAGGAACTGTAACAGCTGTGAGTCGCCATCTTGTAAGAGAAGCCGTTCGAGAGCGACGCTGTAAAGATAACTGCACTGCAATTGTCATTGTTTTCCGGCATAAGTCAGACTAG 1095 44.57 MSGSTNSASGNERLKAECNSKREAKFEGADEISKKLKTEASSESTGRNHEVENGRLGGDVREQKNGSAIVKMSREVIFEIEADVAEDKGSRHAMEDASVVLLDASLDFPGKLRCAHFAVYDGHGGRLAAEHAQKYLHLNVLSSGLPRELVDVKAAKRAILDGFRKTDESLLLESTAGGWQDGATAVCVWILGQKVFVANVGDAKAVVARSPAGTNLQNHPEFESFLKAIVLTREHKAIYPQERARIEKAGGIVSSNGRIQGRLEVSRAFGDRHFKKVGVVATPDIHSFDLTERDHFMIIGCDGLWGVFGPNDAVDFVWKLLKARLLDEGTVTAVSRHLVREAVRERRCKDNCTAIVIVFRHKSD 364
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 45430399 45434842 - Bma008605.1 Bma12g01239 92665
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma12g01239 364 CDD PP2Cc 84 359 IPR001932 -
Bma12g01239 364 SMART PP2C_4 70 357 IPR001932 -
Bma12g01239 364 SUPERFAMILY PP2C-like 73 360 IPR036457 -
Bma12g01239 364 PANTHER INTEGRIN-LINKED KINASE-ASSOCIATED SERINE/THREONINE PHOSPHATASE 2C 23 356 - -
Bma12g01239 364 Gene3D - 79 364 IPR036457 -
Bma12g01239 364 ProSiteProfiles PPM-type phosphatase domain profile. 81 359 IPR001932 -
Bma12g01239 364 MobiDBLite consensus disorder prediction 1 60 - -
Bma12g01239 364 PANTHER PROTEIN PHOSPHATASE 2C 23 356 IPR015655 GO:0004722|GO:0006470
Bma12g01239 364 MobiDBLite consensus disorder prediction 15 59 - -
Bma12g01239 364 Pfam Protein phosphatase 2C 85 347 IPR001932 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma12g01239 Bma-Chr12:45430399 Bma02g00034 Bma-Chr2:353468 2.09E-34 dispersed
Bma12g01239 Bma-Chr12:45430399 Bma04g00294 Bma-Chr4:2356598 2.63E-33 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma12g01239 K17500 - csv:101216467 480.715