Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma12g01246 AAAATGTCAGCTTCCAAAATCTTTCACTTATCCACTCTGCTGTCTCGCACAACCCCGGCCCGTAAACTTCTCTCTCTCCTTCTTCTCTCCAAGCCCTTTCCTTCTCAGTCTCTGAGCTTCAGCCGGTACGGTTCATCCGCTGCCCTTCAGGCTGTCGCCGACGGTAGCCCAGAAGCTCCACCCCACAGTGTCGTCCACCATCCGTGGCCGGAATGGGTGACCTTCGTCGACAGATTGAAGACCAAGGGTTACTTTATGGAATACCCTCCAAAATATGGGGACAAAGATGAGGAAGGCGGTGTAGATGCTTCTGACTCAGTCTCTGTTGGTGCTTACAGTGAAATGAATGTCTTGAAGAATGCCTGCCTAAGCTTTGCGCGCGACCGCTATGACATTTTGAAATCATTATCTACAGAAGATATTAAAGTCGTCGTCAAAAGTGGATGTCCTAATCTATATCGAAAAGCTGTCAACTCAGCAAAAAGATTGCGAGCCTATGTGCAACTGGATGAAGGGGATGTTTGCAGTTCGTGCAATCTCCGAGGCTCTTGTGATAAAGCTTACGTGATTTTAAAGGAAACGGAAGCTGCTTCACGAACGGTGGATGTAGTGCGTATATTGTTATTACATGCTCTTGATCCACTGGTTGTTTCTGCAGGAGTGAAACCTCCTGGTAGGGAGTCTATTGAATTGTCTGCAAGGAGATTGCTCTCTCAGTTAACTGAACTGAGTGGAAAATCCCCTGATACGTCATTGCGCATACATGATGTTAAACCTCCCAGTAAAAAAGAGAAGTCAAAAAATCCGAAGTCAAATCACTTGACAGATGCTGACTTGTTTCAAAATGTTGAGATGAAAAGAGGAGATTGGATGTGCTCCAAGTGTAATTTACTGAATTTTTCAAAAAATTTGCGGTGCCTAGAATGTAACGAGGATGGCCCCAAACAAACTGTAGCAGACAATGTTGAGATGAAGAGTGGAGATTGGATTTGCTCCGAATGTAAGTTCATGAACTTTTCGCGGAACATAAAATGCTTAAAGTGCAAAGGGGATGGGCCGAAAAGGGTGGCTCCCAATGAAGTCGAAATGAAGAAAGGAGATTGGAACTGTGCACAATGTGGGTTCATGAACTTTGCCAGCAATAGAAAGTGCCTGAGGTGCCGAGATGATCGGCCCAAGAGAGAGCTTAAACCCGGGGAGTGGGATTGCCCCTCGTAA 1218 45.73 KMSASKIFHLSTLLSRTTPARKLLSLLLLSKPFPSQSLSFSRYGSSAALQAVADGSPEAPPHSVVHHPWPEWVTFVDRLKTKGYFMEYPPKYGDKDEEGGVDASDSVSVGAYSEMNVLKNACLSFARDRYDILKSLSTEDIKVVVKSGCPNLYRKAVNSAKRLRAYVQLDEGDVCSSCNLRGSCDKAYVILKETEAASRTVDVVRILLLHALDPLVVSAGVKPPGRESIELSARRLLSQLTELSGKSPDTSLRIHDVKPPSKKEKSKNPKSNHLTDADLFQNVEMKRGDWMCSKCNLLNFSKNLRCLECNEDGPKQTVADNVEMKSGDWICSECKFMNFSRNIKCLKCKGDGPKRVAPNEVEMKKGDWNCAQCGFMNFASNRKCLRCRDDRPKRELKPGEWDCPS 405
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 45458527 45466959 + Bma008611.1 Bma12g01246 92672

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma12g01246 405 PANTHER ZINC FINGER PROTEIN 36 315 - -
Bma12g01246 405 PANTHER ZINC FINGER PROTEIN 311 355 - -
Bma12g01246 405 PANTHER ASPARAGINE-RICH PROTEIN 36 315 - -
Bma12g01246 405 PANTHER ZINC FINGER PROTEIN 350 405 - -
Bma12g01246 405 SUPERFAMILY Ran binding protein zinc finger-like 359 393 IPR036443 -
Bma12g01246 405 SUPERFAMILY Ran binding protein zinc finger-like 321 351 IPR036443 -
Bma12g01246 405 ProSiteProfiles Zinc finger RanBP2 type profile. 325 354 IPR001876 -
Bma12g01246 405 SUPERFAMILY Ran binding protein zinc finger-like 282 314 IPR036443 -
Bma12g01246 405 MobiDBLite consensus disorder prediction 249 272 - -
Bma12g01246 405 ProSiteProfiles Zinc finger RanBP2 type profile. 286 315 IPR001876 -
Bma12g01246 405 MobiDBLite consensus disorder prediction 247 275 - -
Bma12g01246 405 ProSiteProfiles Zinc finger RanBP2 type profile. 364 393 IPR001876 -
Bma12g01246 405 Pfam Zn-finger in Ran binding protein and others 325 353 IPR001876 -
Bma12g01246 405 Pfam Zn-finger in Ran binding protein and others 364 387 IPR001876 -
Bma12g01246 405 Pfam Zn-finger in Ran binding protein and others 287 309 IPR001876 -
Bma12g01246 405 Gene3D - 280 316 - -
Bma12g01246 405 Gene3D - 356 394 - -
Bma12g01246 405 Gene3D - 317 354 - -
Bma12g01246 405 SMART zf_4 327 351 IPR001876 -
Bma12g01246 405 SMART zf_4 366 390 IPR001876 -
Bma12g01246 405 SMART zf_4 288 312 IPR001876 -
Bma12g01246 405 PANTHER ASPARAGINE-RICH PROTEIN 311 355 - -
Bma12g01246 405 ProSitePatterns Zinc finger RanBP2-type signature. 368 387 IPR001876 -
Bma12g01246 405 PANTHER ASPARAGINE-RICH PROTEIN 350 405 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma12g01246 - - - cpep:111779556 495.738
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma07g01146 Bma-Chr7:45648350 Bma12g01246 Bma-Chr12:45458527 2.30E-09 dispersed
Bma12g01246 Bma-Chr12:45458527 Bma13g00636 Bma-Chr13:15241115 3.03E-13 dispersed
Bma13g00799 Bma-Chr13:29794238 Bma12g01246 Bma-Chr12:45458527 1.05E-06 dispersed
Bma12g01246 Bma-Chr12:45458527 Bma06g01059 Bma-Chr6:47426806 4.95E-07 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g196 . . . . . . . Bma12g01246 . . Cma10g00332 Cma11g00317 Car10g00314 Car11g00292 Sed08g0408 . Cpe04g01365 Bhi02g00151 Tan09g1810 Cmetu09g0719 . Hepe09g0397 . . Cla06g01415 Cam06g1568 Cec06g1628 Cco06g1620 Clacu06g1530 Cmu06g1484 Cre06g2293 . . . Cone19ag0337 . . . . . Blo15g00057 . . Bpe07g01050 . . . . Cmo10g00358 Cmo11g00322 . . . . . Cpe18g00873 . . . . . . . . . . . . . . Lsi06g01277 Csa01g00440 Chy02g02305 Cme02g01676
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007286 0 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 3 1 3 1 1 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma12g01246 Bma_Chr12 FPKM 3.644501 4.198159 0.0 0.223121 2.127305 2.442459 2.584571 11.235975 10.212658 10.353452