Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma12g01247 ATGAACCTTCATTATCGAGCTTACAACCTTTACTTCTTCATCTCAGTATTCTCCTTCCTCCTACTATCTCGATGTGCTGTTCCTCACGTCCTCTACATCTCCCTAGACGAGCTCAAAGACTCTTCTGCCTCCGACGACTCTTCGGCCGTCTCTCAACAAGACTCGTCGGAATGGGATGAATTCGGTGATTTTGAAACCTATAGGTCCGACGAGGAGCTCGACCCAGGCTCGTGGCGACCGATCTTCGAGCCTGAGTCACCCGTCTCTGATATTGATTCTGAGAAGGAGATGTATTATGATTCTGTGGAGAAGATTGTGTCCGCGACGAGCTCTGGAGATTTGAGATTGATTGAAGAGGCAGAGGCGGTGATCGAGTCTTTGGCCACGCGAAGCGGGGATCCTCACTCGCAGTCTGTCCTAGGGTTTCTCTATAATATGGGAATTATGAGGGAGAGGAGTAAAGGAAAAGGGTTTCTGTATCATTATTTTGCTTCTGAGGGAGGTAATATGCAATCGAAGATGGCTCTTGCATACACTTACTTGAGACAAGATATGTATGAAAAAGCAGTTAAACTTTATGCTGAGTTAGCAAAAGTTGCGATAAATAGTTTTTTAATCTCCAAGGATTCTCCGGTGATTGATCCTGTAAGGATCCATTATGGAGCTGAGGAGAACAAGGAGGCCTTAAGGAAGTCACGAGGAGAGGAAGATGAAGACTTCCAGATATTGGAATATCAGGCACAGAAAGGTAATGCTGCAGCTATGTACAGAGTTGGACTGTTTTACTACTTTGGATTGAGGGGGATGAAACGTGATCATGCCAAAGCACTGTTCTGGTTTTCAAAGGCTGTGGAAAGGGGCGAGCAAAGATCGATGGAACTTCTTGGAGAAATTTATGCTCGGGGAGCTGGGGTAGAAAGAAATTACACTAAAGCACTCAAGTGGCTAAAGCATGCATCCGAACAACCAATTTATCCTGCATATAATGGACTAGGATACTTATATGTCAAAGGATATGGCGTGGAAAAAAATAACTACACCAAAGCTAAAGAGTACTTTGAAAAAGCTGTTGTCAATGATGAACCTGGTGGACACTACAACCTTGGAGTAATGTATCTAAAAGGCATTGGAGTGAAGAGAGATTTGAAGCTAGCTTCTACACATTTTATTTTAGCTGCTAATAATGGACAACCCAAGGGATTCTACCAGCTTGCAAAGATGTTCCATACCGGTGTAGGGCTTAAAAAGAATTTGCCAATGGCTACTGCACTGTACAAAACAGTTGCTGAACGGGGCCCATGGAGTTCATTGTCTAGATGGGCTTTGGAGTCATACTTGAAAGGTAATATTGGCAAGGCATTCCTTTTGTACTCAAGAATGGCTGAGCTTGGATACGAGGTAGCACAAAGTAATGCTGCATGGATTCTAGACAAATATGGGGAGCAGAGTATGTGCATTGGAGAATCTGGATTTTGTACACATGCAGAGAGGCATCAGCGTGCACATTCTATGTGGTGGCAGGCTTCTGAGCAAGGGAATGAGCATGCTGCATTACTAATTGGTGATGCTTACTACTATGGCCGAGGCACTGAAAGGGATTTCGATAGAGCAGCTGAGGCTTACATGCATGCCAAATCGCAATCAAATGCCCAGGCTATGTTTAATCTTGGTTATATGCATGAACATGGCCAAGGACTTCCTTTCGATCTTCATCTTGCTAAACGATATTATGATCTAGCCCTGGCGAGTGACCCTGTGGCAAACTTGCCTGTCACACTTGCCCTTGCTAGCTTGTGGATTCGAAAGAACTATGCTGACAGTTTCATGGTACATTTGATTGATTCACTGCCTGGATTCTACCCAAAAGTGGAAGCATGGGTTGAGAACGTGCTGATGGAGGAAGGCAATGCCACAATTCTCACTCTCTTTGTCTGTCTTCTTACTGTATTATATTTAAGAGAGCGGCAACGAAGGCATGTCGTAGCTGCTGGTGGCGATGGGGCAGTACCACACCAGCCAAATGAAGGTATGGTCGGAGTACCTAATCGATGA 2052 44.59 MNLHYRAYNLYFFISVFSFLLLSRCAVPHVLYISLDELKDSSASDDSSAVSQQDSSEWDEFGDFETYRSDEELDPGSWRPIFEPESPVSDIDSEKEMYYDSVEKIVSATSSGDLRLIEEAEAVIESLATRSGDPHSQSVLGFLYNMGIMRERSKGKGFLYHYFASEGGNMQSKMALAYTYLRQDMYEKAVKLYAELAKVAINSFLISKDSPVIDPVRIHYGAEENKEALRKSRGEEDEDFQILEYQAQKGNAAAMYRVGLFYYFGLRGMKRDHAKALFWFSKAVERGEQRSMELLGEIYARGAGVERNYTKALKWLKHASEQPIYPAYNGLGYLYVKGYGVEKNNYTKAKEYFEKAVVNDEPGGHYNLGVMYLKGIGVKRDLKLASTHFILAANNGQPKGFYQLAKMFHTGVGLKKNLPMATALYKTVAERGPWSSLSRWALESYLKGNIGKAFLLYSRMAELGYEVAQSNAAWILDKYGEQSMCIGESGFCTHAERHQRAHSMWWQASEQGNEHAALLIGDAYYYGRGTERDFDRAAEAYMHAKSQSNAQAMFNLGYMHEHGQGLPFDLHLAKRYYDLALASDPVANLPVTLALASLWIRKNYADSFMVHLIDSLPGFYPKVEAWVENVLMEEGNATILTLFVCLLTVLYLRERQRRHVVAAGGDGAVPHQPNEGMVGVPNR 683
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 45467944 45471882 - Bma008612.1 Bma12g01247 92673

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma12g01247 683 SUPERFAMILY HCP-like 128 198 - -
Bma12g01247 683 SMART sel1 289 324 IPR006597 -
Bma12g01247 683 SMART sel1 325 361 IPR006597 -
Bma12g01247 683 SMART sel1 514 549 IPR006597 -
Bma12g01247 683 SMART sel1 550 585 IPR006597 -
Bma12g01247 683 SMART sel1 398 433 IPR006597 -
Bma12g01247 683 SMART sel1 134 169 IPR006597 -
Bma12g01247 683 SMART sel1 252 288 IPR006597 -
Bma12g01247 683 SMART sel1 362 397 IPR006597 -
Bma12g01247 683 PANTHER ERAD-ASSOCIATED E3 UBIQUITIN-PROTEIN LIGASE COMPONENT HRD3A-RELATED 8 663 IPR044623 GO:0030433
Bma12g01247 683 Gene3D Tetratricopeptide repeat domain 217 605 IPR011990 GO:0005515
Bma12g01247 683 Gene3D Tetratricopeptide repeat domain 114 213 IPR011990 GO:0005515
Bma12g01247 683 SUPERFAMILY HCP-like 343 474 - -
Bma12g01247 683 MobiDBLite consensus disorder prediction 69 88 - -
Bma12g01247 683 PANTHER ERAD-ASSOCIATED E3 UBIQUITIN-PROTEIN LIGASE COMPONENT HRD3A-RELATED 8 663 - -
Bma12g01247 683 Pfam Sel1 repeat 550 581 IPR006597 -
Bma12g01247 683 Pfam Sel1 repeat 516 538 IPR006597 -
Bma12g01247 683 Pfam Sel1 repeat 291 322 IPR006597 -
Bma12g01247 683 Pfam Sel1 repeat 252 287 IPR006597 -
Bma12g01247 683 Pfam Sel1 repeat 327 356 IPR006597 -
Bma12g01247 683 Pfam Sel1 repeat 402 430 IPR006597 -
Bma12g01247 683 Pfam Sel1 repeat 365 396 IPR006597 -
Bma12g01247 683 Pfam Sel1 repeat 447 465 IPR006597 -
Bma12g01247 683 SUPERFAMILY HCP-like 445 585 - -
Bma12g01247 683 SUPERFAMILY HCP-like 233 356 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma12g01247 K14026 SEL1, SEL1L; SEL1 protein - csin:114258582 1023.46
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g193 . . Bda06g00823 . . . . Bma12g01247 Cmo13g01021 Cmo18g00058 . . . . . Cpe20g00156 . . . . . . . . . . . . . . . . . . Cone19ag0338 Lsi02g00238 Csa01g00719 Chy12g01393 Cme12g01827 . Blo15g00056 . . Bpe07g01051 . . . Sed08g2761 . . Cma13g00986 Cma18g00076 Car13g00822 Car18g00067 Cpe09g01111 . Bhi08g01299 Tan05g2186 Cmetu12g0492 . Hepe07g2351 . . Cla04g01042 Cam04g1087 Cec01g1600 Cco01g1648 Clacu04g1113 Cmu04g1096 Cre01g1395 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006564 1 2 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 3 2 1 38
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma12g01247 Bma_Chr12 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0