Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma12g01248 ATGTGTGAAAAGCTGTACATTTTTCCGGGTGCCATTGGAGCTGGAAGTAAAATCAAATTGGTCATTGACCTACTCGAGGGAATTCATCTTGTCGCTTCACTGGAGGCTATTTCTCTGGCAGCAAAATCTGTTATTCATCCATGGATCATTTATGACATCATTTCTAATGCAGCAGGAAATTCATGGATTTTCAAGAATCATGTTCCCCATATGTTGAGAGGCGATTCTGTACCTCATTTTTTGAGCACTTATGTTCAAAAGCTGGGGACTGTTTTGGATAAGGCCAAATCACTTACGTTTCCTCTTCACCTCTTGGCTGTTGCATATCAACAACTTACATTTGGCTCCTCACTTGATTTTCGAAGTGACAATAAGGCATCAGTACTCGAGGTTTGGGAATCTGTTAGTGGAGTGGCTATTACAGATGCTGTGAAGAAGGATATCTATAATCCTGAAAAACTGGCGAATGAGATTATGTCTAAATCAAAAACCATCAAGCGAGTTGGTTTCATTGGTCTTGGAGCAATGGGGTTTGGGATGGCTACTCAGCTTGTGAAATCAAACTTCTGTGTTTACGGTTTTGATGTGTATAAACCAACATTAACTCGATTCGTCGATTCTGGTGGTTTGGTTGGAAACTCTCCAGCAGAAATTAGCAAAGATGTTGAGGTACTTGTTATTATGGTGACAAATGAATCTCAAGCTGAGAGTGTTCTGTATGGTGATTTAGGAGCTGTTTCAGCCCTTCCATCTGGAGCTTCTATTATTCTGTCATCTACAGTCTCTCCTGGATTTATTCGCCAACTCGAGAAAAGCTTGCAAAATGAAGGTAAGAACTTGAAACTGATCGATGCTCCAGTTTCTGGTGGCGTTCAACGTGCCTCCAATGGAACCCTGACTATAATGGCTGCTGGAACAGATGAGGCTCTTACTAGTGCTGGTTCAGTTCTCTTAGCTCTAAGCGAGAAGCTTTATGTTATTCAAGGAGGCTGTGGAGCTGGAAGGATGTTTGAAAACCGTGTTCCACACATGTTGGACAATGATTATACCCCATACTCTGCGCTTGACATCTTTGTCAAAGATTTGGGCATTGTCTCTCGTGAATGTGCGTCACTGAAAGTTCCCCTTCCGATTTCAACTGTTGCACACCAACTCTTTTTGTCAGGTTCGGCTGCAGGTTGGGGTCGGCAAGATGATGCTGGTGTAGTTAAGGTTTATGAGACTCTCACAGGAGTGAAGGTTGCAGGAGAACCTCCCTTTCTTAAGAAAGAAGTTGTATTGAAATCTCTTCCTCCAGAATGGCCTGAAGATCCAATTCCTGATATTCAAATTTTAAACGAGAAAAGTATAAAGACTTTGGTAGTGTTGGACGATGATCCAACGGGAACACAAACTGTTCATGACATTGAGGTGTTAACAGAATGGTCTGTGGAGTCCCTCATCGAACAATTCTGTAAAAGTCCTAAATGCTTTTTCATATTGACGAACTCAAGATCGTTGAGTTCAAGGAAGGCCAGCTTATTAATAGAAGAAATCTGCAAAAATGTACGAATTGCATCTGAATCTGTCAAGAACACAGATTATACTGTAGTTTTGAGAGGAGATTCAACCTTACGAGGTCATTTTCCTGAGGAACCCGATGCTGCTGTCTCGGTCTTAGGAGAGATGGATGCATGGATTATTTGTCCCTTTTTCTACCAAGGCGGGCGTTATACTATCGACGACATACATTATGTTGCAGATTCTGATAAGCTTGTCCCTGCCGGGGAGACGGAGTTTGCAAAAGATGCATCATTTGGCTTCAAATCTTCAAACCTTTGTGAGTGGGTAGAAGAGAAAACAGCTGGCCGCATTCAAGCCAACACTGTTTCCTCTATTTCTCTTCAACTTCTTAGAAAGGGTGGACCAGAGGCTGTTTGTGAGCATCTGTGCAATTTGCAGAAGGGAATAGTGTGCATAGTTAATGCAGCCAGTGAAAGGGACATGGCTGTCTTTGCAGCAGGAATGCTCAAGGCAGAATTGAAAGGCAAGCGGTTTTTATGTCGGACAGCTGCTAGCTTTGTTTCTGCCAGGGTTGGAATTATTCCACGAGCTCCTCTTTTGCCAAAAGATGTTGGGATTGACAAAGAAAGGAATGGTGGGCTTATAGTTGTGGGTTCGTATGTCCCAAAAACAACAAAACAGGTCGAAGAACTTCAATTGCAATGTAGCTCGTTTATTAGAAGCATTGAGGTTTCTGTCGCTAGACTTGCTATGAGCTCGCCAAAAGAGAGGGAAGAGGAAATTAGGAAAACAGCTGAGATGGCTGATGTTCTTCTTGGGACTCAGAAGGAAACTCTGATAATGACTAGTCGAGAGCTTATCACAGGAAAAAGTCCGTCAGAGAGTTTGGAGATCAATTTCAGGGTGAGCTCTGGTTTGGTGGAAATAGTTCGGCGGATATCTATTAAACCTCGTTATATTCTTGCCAAGGGGGGAATCACCTCATCAGATCTTGCTACGAAAGCACTTGAAGCAAAATGTGCAAAAATAGTTGGACAAGCTCTGCCTGGTGTTCCCTTGTGGCAGCTTGGTCCTGAAAGCAGACATCCAGGAGTGCCATACATTGTTTTTCCTGGGAATGTTGGTGATAGTAAAGCTCTAGCTGAACTTGTCAGTTCTTGGGCTCGTCCGGCAAGACTTTCCTCGACAAAAGACATCCTTCTTAATGCAGATAAGGGTGGATATGCAGTAGGAGCATTCAATGTTTATAATCTAGAAGCAGTTGAGGCAGTTGTTGCTGCAGCAGAGGAAGAATTAAGTCCTGCCATTTTACAGATCCATCCTGGTGCTTTAAAGCTAGGAGGGTATCCGTTGGTTGTCTGTTGCATTGCTGCTGCTGAACGAGCCAAAGTTCCTATTACTGTACACTTTGATCATGGAACTTCACGAAAAGATCTTTTGGAAGCTCTTGAATTGGGCTTTGACTCAGTCATGGTAGATGGTTCGCATCTTTCCTTCGAGGAGAATGTTGCCTACACAAAGTTTATATCATCCCTTGCTCATTCCAATGGCATGTTGGTTGAAGCTGAACTTGGGAGATTGTCTGGGACGGAAGATGATTTGACTGTTGAAGATTATGAAGCTAAACTGACTGATATTAACAAGGCTGAAGAGTTCATTGATGAAACTGGAATTGATGCTTTGGCAGTATGCATTGGTAATGTTCATGGAAAATATCCAGCTAGTGGCCCAAACCTTAGACTTGATTTGCTTAAGGATCTACATGCTTTGTGTTCAAAGAAAGGAGTTTTTGTGGTGCTTCATGGAGCCTCTGGATTGTCTCAGGATCTAATTAAGGAATGCATCGAGCGGGGTGTGACGAAATTCAATGTAAACACAGAAGTACGAAAGGCATATATGGATTCTTTGAGTTCGCCGAGCAAAGATCTTGTCGATGCTATGACTGCAGCCAAGCAAGCCATGAAAGCTGTCATTGCAGAGAAGATGCACTTGTTTGGTTCAGCAGGAAAAGCATAA 3519 42.74 MCEKLYIFPGAIGAGSKIKLVIDLLEGIHLVASLEAISLAAKSVIHPWIIYDIISNAAGNSWIFKNHVPHMLRGDSVPHFLSTYVQKLGTVLDKAKSLTFPLHLLAVAYQQLTFGSSLDFRSDNKASVLEVWESVSGVAITDAVKKDIYNPEKLANEIMSKSKTIKRVGFIGLGAMGFGMATQLVKSNFCVYGFDVYKPTLTRFVDSGGLVGNSPAEISKDVEVLVIMVTNESQAESVLYGDLGAVSALPSGASIILSSTVSPGFIRQLEKSLQNEGKNLKLIDAPVSGGVQRASNGTLTIMAAGTDEALTSAGSVLLALSEKLYVIQGGCGAGRMFENRVPHMLDNDYTPYSALDIFVKDLGIVSRECASLKVPLPISTVAHQLFLSGSAAGWGRQDDAGVVKVYETLTGVKVAGEPPFLKKEVVLKSLPPEWPEDPIPDIQILNEKSIKTLVVLDDDPTGTQTVHDIEVLTEWSVESLIEQFCKSPKCFFILTNSRSLSSRKASLLIEEICKNVRIASESVKNTDYTVVLRGDSTLRGHFPEEPDAAVSVLGEMDAWIICPFFYQGGRYTIDDIHYVADSDKLVPAGETEFAKDASFGFKSSNLCEWVEEKTAGRIQANTVSSISLQLLRKGGPEAVCEHLCNLQKGIVCIVNAASERDMAVFAAGMLKAELKGKRFLCRTAASFVSARVGIIPRAPLLPKDVGIDKERNGGLIVVGSYVPKTTKQVEELQLQCSSFIRSIEVSVARLAMSSPKEREEEIRKTAEMADVLLGTQKETLIMTSRELITGKSPSESLEINFRVSSGLVEIVRRISIKPRYILAKGGITSSDLATKALEAKCAKIVGQALPGVPLWQLGPESRHPGVPYIVFPGNVGDSKALAELVSSWARPARLSSTKDILLNADKGGYAVGAFNVYNLEAVEAVVAAAEEELSPAILQIHPGALKLGGYPLVVCCIAAAERAKVPITVHFDHGTSRKDLLEALELGFDSVMVDGSHLSFEENVAYTKFISSLAHSNGMLVEAELGRLSGTEDDLTVEDYEAKLTDINKAEEFIDETGIDALAVCIGNVHGKYPASGPNLRLDLLKDLHALCSKKGVFVVLHGASGLSQDLIKECIERGVTKFNVNTEVRKAYMDSLSSPSKDLVDAMTAAKQAMKAVIAEKMHLFGSAGKA 1172
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 45473717 45502619 - Bma030546 Bma12g01248 92674

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma12g01248 1172 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 166 327 IPR036291 -
Bma12g01248 1172 SUPERFAMILY 6-phosphogluconate dehydrogenase C-terminal domain-like 295 413 IPR008927 -
Bma12g01248 1172 PANTHER KETOSE-BISPHOSPHATE ALDOLASE CLASS-II FAMILY PROTEIN 337 1099 - -
Bma12g01248 1172 Pfam Nucleotide-binding C-terminal domain 715 881 IPR031475 -
Bma12g01248 1172 SUPERFAMILY YgbK-like 453 885 - -
Bma12g01248 1172 PANTHER ALDOLASE-RELATED 124 333 - -
Bma12g01248 1172 SUPERFAMILY Aldolase 896 1172 - -
Bma12g01248 1172 Gene3D Aldolase class I 888 1172 IPR013785 -
Bma12g01248 1172 Pfam Sugar-binding N-terminal domain 453 690 IPR010737 -
Bma12g01248 1172 PANTHER ALDOLASE-RELATED 2 128 - -
Bma12g01248 1172 PANTHER KETOSE-BISPHOSPHATE ALDOLASE CLASS-II FAMILY PROTEIN 2 128 - -
Bma12g01248 1172 PANTHER KETOSE-BISPHOSPHATE ALDOLASE CLASS-II FAMILY PROTEIN 124 333 - -
Bma12g01248 1172 TIGRFAM cbbA: ketose-bisphosphate aldolase 895 1172 IPR000771 GO:0005975|GO:0008270|GO:0016832
Bma12g01248 1172 Gene3D - 10 140 IPR013328 GO:0016491
Bma12g01248 1172 Pfam NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase 13 127 IPR029154 GO:0051287
Bma12g01248 1172 Pfam NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase 299 406 IPR029154 GO:0051287
Bma12g01248 1172 Pfam NAD binding domain of 6-phosphogluconate dehydrogenase 167 325 IPR006115 GO:0050661
Bma12g01248 1172 Gene3D - 705 887 IPR042213 -
Bma12g01248 1172 CDD TBP_aldolase_IIB 897 1170 IPR000771 GO:0005975|GO:0008270|GO:0016832
Bma12g01248 1172 PANTHER ALDOLASE-RELATED 337 1099 - -
Bma12g01248 1172 Gene3D - 452 691 IPR037051 -
Bma12g01248 1172 SUPERFAMILY 6-phosphogluconate dehydrogenase C-terminal domain-like 12 138 IPR008927 -
Bma12g01248 1172 Gene3D - 160 329 - -
Bma12g01248 1172 Pfam Fructose-bisphosphate aldolase class-II 896 1171 IPR000771 GO:0005975|GO:0008270|GO:0016832
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma12g01248 - - - qsu:111993890 1824.68
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma12g01248 Bma-Chr12:45473717 Bma14g00902 Bma-Chr14:10158356 4.28E-11 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g180 . . Bda06g00824 . . . . Bma12g01248 . . . . Car10g00316 . . . . Bhi02g00155 . . . Hepe09g0400 . . Cla06g01412 Cam06g1565 Cec06g1625 Cco06g1617 Clacu06g1527 Cmu06g1481 Cre06g2290 . . . Cone19ag0357 . . . . . Blo15g00055 . . Bpe07g01052 . . . . Cmo10g00361 . . . . . . . . . . . . . . . . . . . . . Lsi06g01272 Csa01g00444 Chy02g02301 Cme02g01672
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009138 1 5 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma12g01248 Bma_Chr12 FPKM 0.346829 0.386213 0.0 0.110888 5.161625 1.54798 3.419056 0.045943 0.080719 0.086044