Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma12g01250 ATGGCAAGTGGTCCTGGACTGGAATCTCTCGTCGATCAAACAATTTCAGTCATCACAAACGATGGACGAAATATAGTGGGGATTTTGAAAGGGTTTGACCAAGCTACAAATATCATCCTCGACGAATCCCACGAACGAGTGTACTCAACAAAGGAAGGTGTTCAGCAACTTGTGTTGGGTCTGTACATAATAAGGGGTGACAACATAAGTATTGTTGGAGAGCTTGATGAAGAGCTTGATTCTAGTCTTGACTTGTCAAAATTGAGGGCTCACCCACTCAAGCCTGTGATTCACTGA 297 43.43 MASGPGLESLVDQTISVITNDGRNIVGILKGFDQATNIILDESHERVYSTKEGVQQLVLGLYIIRGDNISIVGELDEELDSSLDLSKLRAHPLKPVIH 98
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 45522214 45522978 - Bma008614.1 Bma12g01250 92676

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma12g01250 98 SUPERFAMILY Sm-like ribonucleoproteins 7 81 IPR010920 -
Bma12g01250 98 PANTHER U6 SNRNA-ASSOCIATED SM-LIKE PROTEIN LSM8 5 98 - -
Bma12g01250 98 PANTHER LSM1 5 98 IPR044642 -
Bma12g01250 98 Pfam LSM domain 7 73 IPR001163 -
Bma12g01250 98 SMART Sm3 5 74 IPR001163 -
Bma12g01250 98 CDD LSm8 5 94 IPR034103 GO:0000398|GO:0005688|GO:0046540
Bma12g01250 98 Gene3D - 6 97 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma12g01250 K12627 LSM8; U6 snRNA-associated Sm-like protein LSm8 - ming:122074056 176.407
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bma08g00133 Bma12g01250 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma08g00136 Bma-Chr8:1804072 Bma12g01250 Bma-Chr12:45522214 6.60E-65 dispersed
Bma12g01250 Bma-Chr12:45522214 Bma15g00455 Bma-Chr15:4935618 1.62E-07 dispersed
Bma15g00315 Bma-Chr15:3028751 Bma12g01250 Bma-Chr12:45522214 7.67E-13 transposed
Bma12g01250 Bma-Chr12:45522214 Bma08g00133 Bma-Chr8:1743158 6.60E-65 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g9 . . . . . Bpe07g01055 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bda06g00827 . . Bpe12g00621 Bma08g00133 Bma12g01250 . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi16g952 . . Bda05g00146 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Blo07g00310 . Bda06g00800 . . . . Bma12g01250 . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008472 1 4 1 3 1 0 1 0 0 1 1 0 1 1 1 1 0 2 1 1 1 1 1 2 2 1 0 2 3 1 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma12g01250 Bma_Chr12 FPKM 44.743759 49.199795 16.330608 15.132027 23.59977 23.420336 21.27599 14.305741 14.768925 12.517026