Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma12g01259 ATGGACAGATTGAGACCGGTATGGGCAGTGAAGGCGATAGTGTTGATTGTAATCACATCGATTTTCTTCCGTTGCGTCTGGGCAACAAACCACTCGGTTAGCTGGGATCTTAGTTCCAACCTTCATGCCTGGTCTACTAAAACCAAGTTTCATGCCGGTGACCTTCTAGAGTTCATGTACTTACCGCCACACGACGTGCTGGAAGTGAACCAGATTGACTATATCATGTGCCGCACCATGAAACCCATCAAAGCTTATATCCACGGGGAGTCGGTAATCCGTCTCCATCAACCTGGTACACGATACTTCATTTGCGGCCGTCTTCGACACTGCTTCATGGGGCTAAAGCTTCAAGTCAGGGTCCTCGAGCAGCGGTTGATCGACAGTAATAATTCCACGGATGGTGATGGTGATGGTGACCCAGAGCAAGGCCGCCGTAGCAACAATACGCCTTCGTCTCCTCCTGCTCCTCCTCGTCCCAGCACTCGTTCTTCGTCTCCTCCTCCTCCTCCTAGATCTGGTTCTTCAGACGATCCACCGGAAGCTCCGGATATATCAGGGCAATCTCCTCTTCCTTGCTGCTCTTCGGCAGGCAATTTGATGAAATGGGGGTGGGTGATTTGCATTACGCTCGTAATCCTCACAGTCTCTGCATGGTCTCCTCAAGAGCTTCGTCTCTTCTTGGCTTCCTTATTCAGCGGGTCTACTTCATTGATCAGCTAG 723 50.76 MDRLRPVWAVKAIVLIVITSIFFRCVWATNHSVSWDLSSNLHAWSTKTKFHAGDLLEFMYLPPHDVLEVNQIDYIMCRTMKPIKAYIHGESVIRLHQPGTRYFICGRLRHCFMGLKLQVRVLEQRLIDSNNSTDGDGDGDPEQGRRSNNTPSSPPAPPRPSTRSSSPPPPPRSGSSDDPPEAPDISGQSPLPCCSSAGNLMKWGWVICITLVILTVSAWSPQELRLFLASLFSGSTSLIS 240
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 45640733 45641966 + Bma008624.1 Bma12g01259 92685

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma12g01259 240 PANTHER BLUE COPPER PROTEIN 32 129 IPR039391 GO:0009055
Bma12g01259 240 Gene3D - 27 126 IPR008972 -
Bma12g01259 240 Pfam Plastocyanin-like domain 38 114 IPR003245 GO:0009055
Bma12g01259 240 SUPERFAMILY Cupredoxins 33 122 IPR008972 -
Bma12g01259 240 MobiDBLite consensus disorder prediction 129 190 - -
Bma12g01259 240 ProSiteProfiles Phytocyanin domain profile. 29 123 IPR003245 GO:0009055
Bma12g01259 240 PANTHER COPPER ION BINDING / ELECTRON CARRIER PROTEIN-RELATED 32 129 - -
Bma12g01259 240 CDD Phytocyanin 29 121 - -
Bma12g01259 240 MobiDBLite consensus disorder prediction 151 177 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma12g01259 - - - csv:101216391 174.481
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma12g00785 Bma-Chr12:36023918 Bma12g01259 Bma-Chr12:45640733 2.80E-24 dispersed
Bma12g01259 Bma-Chr12:45640733 Bma06g01455 Bma-Chr6:51231789 7.17E-13 dispersed
Bma12g01259 Bma-Chr12:45640733 Bma04g00446 Bma-Chr4:3668363 5.01E-17 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g973 . . . . Bpe12g00630 . . Bma12g01259 . . . . . . . Cpe20g00050 . . . . . . . . . . . . . . . . . . . Lsi02g00032 Csa01g00508 Chy12g01576 Cme12g02034 . . . . Bpe07g01066 . . . . . . Cma13g01102 . Car13g00936 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011830 1 1 2 1 2 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 0 1 1 1 1 1 1 1 1 30
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma12g01259 Bma_Chr12 FPKM 1.51377 1.416066 9.640405 8.979025 2.76352 2.347908 2.676762 7.349941 6.572022 8.083753