Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma12g01260 ATGTCTTCGCCCAGCCGTAGCTCTGGCGGCAGCGTTGGAGGGGCTGCCGGCGAGGATCCCCTGCTTTACTTCTGCTACGAGTGCAACCAAACGGTTTCCATTGTTCAATCGGCTTCCTCTGATCTTATCTGTCCCAATTGCAACGGTGGCTTCATCGAAGAATTAGAAACCCCTAACCATAACCCTAGCCCTAATCCCTTTCCTTTTTCTTTCTCCTTTAACGCCGAATCTTTCTCGGATTTTGGTTCCGCCGGTGGCGGTTCCGATGATTCCCCGTTTGTTTTCTCTACTACAGCCTCCGGGGGCGACGGTGGCACCGTTATAAACGATCTTTCTCAGCTCTTTGGTGCCGGTCCTACTCGACTGCAGGATCAGGAGGGCTTCAATCCTTTGTTGTTCCTTCAGAATTATCTCCAAAATGCTAATGTCCAGTTAGTGATCCAGAATGTCTCGGGGGAGGCTTTTCACCCGCATGCGAATCTCAATCTCGGAGACTACTTCTTCGGCCCTGGTCTTGAGCAATTAATTCAGCAGCTGGCAGAGAACGATCCTAATAGGTATGGCACGCCTCCGGCGGCTAAATCAGCCGTGGAGGGGCTTCCCGATGTTAAAATTACCAAAGAAATATTGACATCGGATTCATCCCACTGTGCTGTTTGTACTGATTTGTTTGAACTGGGCGAGGAGGCTAAACAGTTGCCCTGCAAACATATATACCATTCAAATTGTATCATGCCTTGGTTGGAAATGCATAATTCTTGCCCAGTGTGTCGGCACGAGTTACCCACTGATGACCCTGATTATGAGCAAAGGGTCCACGGAAATCCTGCTCCTGCCACTGAAAGGCATAGTCAAACTAGTGCTATCGGTGGAAGTATTCAAGATGGAGCTTTTGGAAGCGAGGCAAATTCAGGAGAAAATTCTGATTCACCTTCCCAACTCGCAGGTGATCGCATGTTTAGGAGGATTTCCTTACCTTGGCCGTTTAGAGTATTTGGTTCACCTGCTGAGACTAGTAATAGCGGGAGAGACAACAATGATGAACCAAATTCAGGCAACAGAGAAAATCAAAATACCCAATCAGAGCCTAGGCAGGAAGACCTTGATTAA 1110 48.2 MSSPSRSSGGSVGGAAGEDPLLYFCYECNQTVSIVQSASSDLICPNCNGGFIEELETPNHNPSPNPFPFSFSFNAESFSDFGSAGGGSDDSPFVFSTTASGGDGGTVINDLSQLFGAGPTRLQDQEGFNPLLFLQNYLQNANVQLVIQNVSGEAFHPHANLNLGDYFFGPGLEQLIQQLAENDPNRYGTPPAAKSAVEGLPDVKITKEILTSDSSHCAVCTDLFELGEEAKQLPCKHIYHSNCIMPWLEMHNSCPVCRHELPTDDPDYEQRVHGNPAPATERHSQTSAIGGSIQDGAFGSEANSGENSDSPSQLAGDRMFRRISLPWPFRVFGSPAETSNSGRDNNDEPNSGNRENQNTQSEPRQEDLD 369
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 45646726 45647835 + Bma008625.1 Bma12g01260 92686

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma12g01260 369 MobiDBLite consensus disorder prediction 267 314 - -
Bma12g01260 369 SMART ring_2 217 257 IPR001841 -
Bma12g01260 369 Pfam Ring finger domain 216 258 IPR001841 -
Bma12g01260 369 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RING1 14 336 - -
Bma12g01260 369 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 14 336 - -
Bma12g01260 369 Pfam zinc-ribbon 23 55 IPR039525 GO:0061630
Bma12g01260 369 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 179 264 IPR013083 -
Bma12g01260 369 MobiDBLite consensus disorder prediction 334 359 - -
Bma12g01260 369 ProSiteProfiles Zinc finger RING-type profile. 217 258 IPR001841 -
Bma12g01260 369 MobiDBLite consensus disorder prediction 331 369 - -
Bma12g01260 369 CDD RING-H2_RNF126_like 217 258 - -
Bma12g01260 369 SUPERFAMILY RING/U-box 203 265 - -
Bma12g01260 369 MobiDBLite consensus disorder prediction 279 314 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma12g01260 K11982 RNF115_126; E3 ubiquitin-protein ligase RNF115/126 [EC:2.3.2.27] - csv:101205252 442.58
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g00903 Bma-Chr1:8725143 Bma12g01260 Bma-Chr12:45646726 1.82E-24 dispersed
Bma03g00747 Bma-Chr3:6838900 Bma12g01260 Bma-Chr12:45646726 1.05E-13 dispersed
Bma05g01372 Bma-Chr5:53174213 Bma12g01260 Bma-Chr12:45646726 6.30E-42 dispersed
Bma11g00109 Bma-Chr11:1075332 Bma12g01260 Bma-Chr12:45646726 2.23E-42 dispersed
Bma11g00345 Bma-Chr11:3389968 Bma12g01260 Bma-Chr12:45646726 8.02E-47 dispersed
Bma12g01260 Bma-Chr12:45646726 Bma07g00317 Bma-Chr7:3806447 1.92E-42 dispersed
Bma14g01068 Bma-Chr14:12991749 Bma12g01260 Bma-Chr12:45646726 2.07E-31 dispersed
Bma15g00440 Bma-Chr15:4756913 Bma12g01260 Bma-Chr12:45646726 1.41E-26 dispersed
Bma12g01260 Bma-Chr12:45646726 Bma01g02657 Bma-Chr1:84067844 8.25E-47 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g964 . . . . Bpe12g00632 . . Bma12g01260 Cmo13g00999 . . . . . . Cpe20g00175 . . . . . . . . . . . . . . . . . . . . Csa01g00747 Chy12g01365 Cme12g01797 Blo13g00102 . . . Bpe07g01067 . . . . . . Cma13g00964 . . Car18g00086 Cpe09g01094 . Bhi08g01341 Tan05g2147 . Lac10g0321 . . . Cla01g01465 Cam01g1533 Cec01g1573 Cco01g1620 Clacu01g1557 Cmu01g1447 Cre01g1369 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004117 1 3 3 1 3 1 1 1 1 1 1 1 1 1 1 1 1 4 2 1 1 1 1 1 1 0 1 5 3 0 44
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma12g01260 Bma_Chr12 FPKM 3.200735 3.600383 3.557508 2.54575 13.787383 16.317116 13.446774 3.414114 3.261246 2.856234