Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma12g01262 ATGGTGAGAAAGAAGAGAAGCGAGGGTGAGAGCTCGGAATCCCAGGAAGCTAGTGGGAGTGGTGGCCGTGGTGGTCCTCAACGTCATGGCGAAAGGGGTGGCCCATCCCAACAGCAACAAGGGTCAAGGTGGGGTCCTCAAGGTGGTCGAGGAGGTCCACATGGTGGTGCTGGTGGTGGAGGGCGAGGTCGGGGAATGCCTCAACAGCAACAACAGTATGAATACCAAGGAAGAGGTAGGGGGGGTCCGCCTCAACAAGGAGGTGGACGTGGTGGCTTTCGTGGTGGCCTTGCTGGAGGACCGCCTCCTTCAGGTGAGCCATCCAGACCACCTGTTTCCGAGCTGCACCAAGCTACCTCGGCTCCATATCAAGTTGGGGTGTCTCATTACACACCAGATATCGGTAGTTCTTCTAGGCTGCCTGAAGTACCCAGGATGGAGCAACCGTTTGAGCACTTATCCGTTCAGGAGGAAGCTGCTTCTAGTCAAGCCATTCAACCAGTGCCACCCTCAAGCAAGTCAATGAGGTTTCCACTTCGTCCTGGAAAAGGTAGCGTTGGCATAAGTTGTATTGTGAAGGCCAATCACTTTTTTGCTGAACTACCTGACAAAGATCTTCATCAGTATGATGTTACAATTATACCAGAGGTGACTTCACGGGGTGTAAACCGCGCTGTAATGGATCAGTTAGTGAAATCTTACAGGGAATCTCATCTGGGTAGAAGGCTTCCAGCTTATGATGGTAGGAAAAGTCTTTATACCGCAGGCCCCCTTCCCTTTTCATCAAAGGAATTTAAAATCACTCTCCTGGATGAAGATGATGGATCGGGCGCACAAAGGAGGGAGAGAGAATTTAGAGTTGTGATCAAATTTGCTGCACGAGCTGACCTACATCATTTAGGACTCTTTTTGCAAGGCAGGCAAGCAGATGCTCCTCAGGAAGCCCTCCAGGTTCTGGACATTGTCCTTCGTGAACTGCCTACTGCTAGATATTGTCCTGTTGGTCGATCTTTTTATGCTCCTGGTTTGGGAAGCCGTCAATCACTGGGTGAGGGATTGGAAAGTTGGCGCGGCTTTTATCAAAGTATTCGCCCGACACAAATGGGACTCTCTCTCAATATTGATATGTCTTCTACTGCTTTCATTGAGCCATTGCCAGTCATTGAATTTGTGACACAGCTACTGAACCGAGATGTGTCAGCGCGAACATTGTCCGATGCTGATCGCGTCAAGATAAAGAAAGCCTTACGAGGAGTTAAGGTTGAAGTCACTCATCGAGGGAATATGCGAAGGAAGTATCGTATTTCTGGTCTAACATCGCAGGCAACCCGGGAACTCACTTTCCCAGTTGATGAGATCGGAACGATGAAATCTGTTGTTGAATATTTTTATGAAACCTATGGTTTTGTAATACAACATACGCAGTGGCCTTGCCTGCAAGTGGGGAACCAACAGAGACCTAATTATTTACCAATGGAGGTGTGTAAGATTGTTGAGGGACAGAGGTACTCCAAAAGGCTAAATGAAAAACAGATAACTGCACTGCTGAAAGTCACCTGCCAGCGCCCTAAAGATAGGGAGAAAGATATTCTGCTGACTGTTAGGCATAATGCATATGATGATGACCCATATGCTAAAGAGTTTGGGATTAAGATCAGTGATAAGCTTGCTTCTGTTGAAGCTCGTATTCTCCCTGCCCCTCGGCTCAAATATCATGAAACTGGTAGGGAAAAAGATTGTTTACCACAAGTTGGGCAATGGAACATGATGAATAAGAAAATGGTTAATGGTGGTACGGTGAACCATTGGATCTGCATCAATTTTTCTCGTTCTGTACAAGACAGCGTTGCCCGGGGATTCTGCTTTGAACTTGCTCAAATGTGTTATACTTCTGGAATGGCTTACAATCCAGAACCAGTACTGCCTGTGCTTAGTGCTCGTCCTGATCAAGTAGAGAAGGTTCTTAAAACTCGGTATCACGATGCCATGACGAAACTTCATCCCCAGGGCAAAGAACTTGATTTGCTTATTGTTATTCTGCCAGATAATAATGGGTTTCTTTATGGTGAGTGA 2073 47.03 MVRKKRSEGESSESQEASGSGGRGGPQRHGERGGPSQQQQGSRWGPQGGRGGPHGGAGGGGRGRGMPQQQQQYEYQGRGRGGPPQQGGGRGGFRGGLAGGPPPSGEPSRPPVSELHQATSAPYQVGVSHYTPDIGSSSRLPEVPRMEQPFEHLSVQEEAASSQAIQPVPPSSKSMRFPLRPGKGSVGISCIVKANHFFAELPDKDLHQYDVTIIPEVTSRGVNRAVMDQLVKSYRESHLGRRLPAYDGRKSLYTAGPLPFSSKEFKITLLDEDDGSGAQRREREFRVVIKFAARADLHHLGLFLQGRQADAPQEALQVLDIVLRELPTARYCPVGRSFYAPGLGSRQSLGEGLESWRGFYQSIRPTQMGLSLNIDMSSTAFIEPLPVIEFVTQLLNRDVSARTLSDADRVKIKKALRGVKVEVTHRGNMRRKYRISGLTSQATRELTFPVDEIGTMKSVVEYFYETYGFVIQHTQWPCLQVGNQQRPNYLPMEVCKIVEGQRYSKRLNEKQITALLKVTCQRPKDREKDILLTVRHNAYDDDPYAKEFGIKISDKLASVEARILPAPRLKYHETGREKDCLPQVGQWNMMNKKMVNGGTVNHWICINFSRSVQDSVARGFCFELAQMCYTSGMAYNPEPVLPVLSARPDQVEKVLKTRYHDAMTKLHPQGKELDLLIVILPDNNGFLYGE 690
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 45660405 45664200 - Bma008627.1 Bma12g01262 92688
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma12g01262 690 ProSiteProfiles PAZ domain profile. 385 499 IPR003100 GO:0005515
Bma12g01262 690 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 75 690 - -
Bma12g01262 690 Pfam Argonaute linker 1 domain 333 383 IPR014811 -
Bma12g01262 690 Pfam Glycine-rich region of argonaut 71 170 IPR024357 -
Bma12g01262 690 SMART PAZ_2_a_3 389 521 IPR003100 GO:0005515
Bma12g01262 690 MobiDBLite consensus disorder prediction 1 116 - -
Bma12g01262 690 SUPERFAMILY PAZ domain 192 528 IPR036085 GO:0005515
Bma12g01262 690 MobiDBLite consensus disorder prediction 155 178 - -
Bma12g01262 690 Pfam Mid domain of argonaute 582 657 IPR032473 -
Bma12g01262 690 Gene3D paz domain 378 503 - -
Bma12g01262 690 SMART DUF1785_2 332 384 IPR014811 -
Bma12g01262 690 PANTHER PROTEIN ARGONAUTE 1A 75 690 - -
Bma12g01262 690 Pfam PAZ domain 389 515 IPR003100 GO:0005515
Bma12g01262 690 Gene3D - 563 690 - -
Bma12g01262 690 CDD PAZ_argonaute_like 384 498 - -
Bma12g01262 690 Pfam N-terminal domain of argonaute 190 323 IPR032474 -
Bma12g01262 690 MobiDBLite consensus disorder prediction 155 170 - -
Bma12g01262 690 Pfam Argonaute linker 2 domain 525 571 IPR032472 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma12g01262 Bma-Chr12:45660405 Bma14g00429 Bma-Chr14:5006971 5.48E-129 dispersed
Bma12g01262 Bma-Chr12:45660405 Bma08g00120 Bma-Chr8:1483433 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma12g01262 K11593 - rcu:8275074 1028.08