Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma12g01265 ATGGAGTACGGTAGTGGAGGCGGTGGCTACGGCGGGGATGACGATTTGTTTTCCGACCAAAAGAAGAGGAAGAAACGCTACCATCGTCACACTGCTCATCAGATTCAGAATCTCGAAGCGATGTTCACCGAGTGCCCTCACCCAGATGAAAAACAGAGAATGCAGTTGAGCAGAGAACTGGGTTTGGCGCCCCTGCAAATCAAATTCTGGTTCCAAAACAGAAGAACCCAGATGAAGACCCAACACGAGAGAGCAGACAACTGTTCTCTCCGCGCAGAGAACGACAAGATCAGATTTGAAAACATTGCGATAAGAGAAGCACTCAAAAATTTGATTTGTCCATCATGTGGTGGACCTCCCCTTACCGAAGATTCCTATTTCGATGAGCAGAAGCTTCGCATGGAGAATTCCCAGTTGAAACAAGAGCTTGACAGAGTTTCCAGCATTGCAGCTAAATACATGGGGAGGCCAATTTCCCAACTCCCACCTGTTCATCCTATCCATATTTCCTCTCTTGAGCTATCAATGGGTAATTTTGGAACTTCTGGTCCTTCTCTGGATCTTGATCCTCTCCCAGGAACCTCGTTGACTGGTCGGTCTTTACCTTTCCAGTCGATCGGCTTATCCGATGAGGATAAATCCCTAATGGCTGATATAGCTGCACATTCAATGGAAGAACTAATCGGGCTTGCGCAATCAAATGAACCATTATGGATGAAATCCTCCACACATGGGAAAGACGTTCTTAATCTCGAAAATTACTACCGGATTTTCCCCAAGCCTACAGTCCCATTGAAAAATCCCCATCTGCGAATTGAAGCGTCTAGAGATTCTGGTGTTGTTATAATGAATTCTTTAACATTGGTGGACATGTTTATGGACTCTAACAAGACAATGGAGCTATTTCCCGGCATTATTTCATCGGCAAGAACGATGGAAGTGATATCGTCTGGATTATTGGGTAGCCATAGTGGAACTTTACTTCTGATGCATGAAGAATTACAGGTCCTTTCTCCATTAGTACCGACTCGAGAGTTCTATTTCTTAAGATATTGCCAGCAAATCAATCAGGGGTTGTGGGCAATATGCAATGTTTCGTACGATTTTCCGGGGGAAAATCGGTTCGGTTCCCAGTTTCAATCTCGTCGGCTTCCATCAGGCTGCCTGATTCAAGACATGCCAAATGATCATTCTAAGGTTATTTGGGTTGAACATGTGGAAATCGAAGACAAAAACCCTCCTCATCGACTCTATCGAGACCTGTTTTATGGTGGCATCGCATTCGGCGCTGAAAGATGGGTTGCCACTCTCCAAAGAATGTGCGAAAGATTTGCCTCTTCAACGGCTGCAGCCAATTCTGCCCGCGAACTCGAAGGAGTAATTTTTTCGCCAGACGGCAAGAGGAGCACGATGAAACTGGCCCAGCGAATGATCAACAACTTTTGTGCAAGTATCAGCACATCGAACGGTCACCGATGGACGACTCTTTCCGGACAGAACGAGGTCGGAGTTAGAGTCACGGTCCATAAAAGCAATAATCCTGGCCAACCCAATGGTGTGGTTCTTAGTGCAGCCACCACAATTCGGCTCCCCGTTTCCCCGCGGGACGTCTTCGATTTTTTCAGAGACGAACGAACTCGATCTCAGTGGGATGTTCTTTCTGATGGAAATGTAATTCAAGAGGTTGCGCATATCGCAAATGGATCACATCCAGGAAACTGCATATCAATTCTTCGAGCCCTCAACACCAGCCAGAACAACATGTTGATACTCCAAGAAAGTAGCACAGATTCATCTGGGTCGATGGTTGTCTACTGCCCGGTCGATCTTCCGGCCATTAACATCGCAATGAGCGGAGAAGACCCTTCGCATATTCCACTGCTACCGTCCGGGTTTGTCATATCGCCAGACGGCCGAGCCGAACAATCTCCTTCGACGAGCTCCGGCCAATCGGGTGGATCTTTGATTACAGTAGCATTTCAGATACTAATGAGCAGCCTGCCATCAGGTAAGCTAAACTTAGAGTCAGTGACAACTGTTAATAACCTTATTGGAACCACTGTCCAGCAAATTAAGACAGCTCTGAACTGCCCCAGTACACTATCAATAAGAGAGAGCGAAAGAGAGAGAGAGAGAGTTTCTCTCTCTAGCATACTTAAATAG 2163 46.32 MEYGSGGGGYGGDDDLFSDQKKRKKRYHRHTAHQIQNLEAMFTECPHPDEKQRMQLSRELGLAPLQIKFWFQNRRTQMKTQHERADNCSLRAENDKIRFENIAIREALKNLICPSCGGPPLTEDSYFDEQKLRMENSQLKQELDRVSSIAAKYMGRPISQLPPVHPIHISSLELSMGNFGTSGPSLDLDPLPGTSLTGRSLPFQSIGLSDEDKSLMADIAAHSMEELIGLAQSNEPLWMKSSTHGKDVLNLENYYRIFPKPTVPLKNPHLRIEASRDSGVVIMNSLTLVDMFMDSNKTMELFPGIISSARTMEVISSGLLGSHSGTLLLMHEELQVLSPLVPTREFYFLRYCQQINQGLWAICNVSYDFPGENRFGSQFQSRRLPSGCLIQDMPNDHSKVIWVEHVEIEDKNPPHRLYRDLFYGGIAFGAERWVATLQRMCERFASSTAAANSARELEGVIFSPDGKRSTMKLAQRMINNFCASISTSNGHRWTTLSGQNEVGVRVTVHKSNNPGQPNGVVLSAATTIRLPVSPRDVFDFFRDERTRSQWDVLSDGNVIQEVAHIANGSHPGNCISILRALNTSQNNMLILQESSTDSSGSMVVYCPVDLPAINIAMSGEDPSHIPLLPSGFVISPDGRAEQSPSTSSGQSGGSLITVAFQILMSSLPSGKLNLESVTTVNNLIGTTVQQIKTALNCPSTLSIRESERERERVSLSSILK 720
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 45678632 45681528 - Bma008630.1 Bma12g01265 92691
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma12g01265 720 Pfam START domain 219 443 IPR002913 GO:0008289
Bma12g01265 720 Gene3D - 474 692 IPR023393 -
Bma12g01265 720 SMART HOX_1 22 85 IPR001356 GO:0003677
Bma12g01265 720 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 6 698 IPR042160 -
Bma12g01265 720 SUPERFAMILY Bet v1-like 464 692 - -
Bma12g01265 720 Pfam Homeodomain 24 79 IPR001356 GO:0003677
Bma12g01265 720 SUPERFAMILY Bet v1-like 210 445 - -
Bma12g01265 720 SUPERFAMILY Homeodomain-like 10 81 IPR009057 -
Bma12g01265 720 CDD START_ArGLABRA2_like 213 442 - -
Bma12g01265 720 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ROC8 6 698 - -
Bma12g01265 720 Gene3D - 14 95 - -
Bma12g01265 720 ProSiteProfiles 'Homeobox' domain profile. 21 81 IPR001356 GO:0003677
Bma12g01265 720 ProSitePatterns 'Homeobox' domain signature. 56 79 IPR017970 GO:0000981|GO:0006355
Bma12g01265 720 MobiDBLite consensus disorder prediction 1 26 - -
Bma12g01265 720 SMART START_1 218 443 IPR002913 GO:0008289
Bma12g01265 720 Gene3D - 217 421 IPR023393 -
Bma12g01265 720 ProSiteProfiles START domain profile. 209 446 IPR002913 GO:0008289
Bma12g01265 720 CDD homeodomain 23 82 IPR001356 GO:0003677
Bma12g01265 720 Coils Coil 129 149 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g01177 Bma-Chr1:13028626 Bma12g01265 Bma-Chr12:45678632 2.30E-106 dispersed
Bma07g00903 Bma-Chr7:31745117 Bma12g01265 Bma-Chr12:45678632 0 dispersed
Bma12g00798 Bma-Chr12:37356095 Bma12g01265 Bma-Chr12:45678632 0 dispersed
Bma12g01265 Bma-Chr12:45678632 Bma13g00826 Bma-Chr13:33125334 1.50E-160 dispersed
Bma12g01265 Bma-Chr12:45678632 Bma02g01326 Bma-Chr2:55771471 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
58188 PF01852 START 3.40E-46 CL0209 Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma12g01265 K09338 - mnt:21407821 1085.48