Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma12g01266 ATGGCTGGTGTTGATAAAGATGATGTTCCAATTCTATCAGACACAAACCCATCATTATATGATGAACAAATGAATTCTCAATTTCAGTCATTCAATTCAGCTTCAAGAAGTCCGTCAATTTCATATGAGTGTGAACTCACTGGCTATACCGGCCCTCTACAGAGTGAAAGAAGAACTCCTTTTCCACAGATGAGGGGAAAAGAACCAACTGACGAAAATATTCCATCTTGGGAAGGAAAGAGCAGGGCTGGTTGGTCCAATAGAAACAATGATGGAAAAAATCAACATTTATTGCGGTCTGGTCGGTTGGGACAGTGTAGTGATCCTTATTGCACAACTTGTCCAACCTACAATGTTAAAACTGCACAGCAGAAGAGTTCAAGAGGCTCTGGCTTATTTGAACACAAGTTTCATAATGCTCTTTACAAAGGCTGGGCTAGGAAGTTTTGGTCCTGTATGAATCCATATATTCCAAGAGTGATGAATCCTCATACAAAGATTATCCAAAAGTGGAACAAGTTTTTTGTTATTGCTTGCTTAGTGGCGATTTTTTTCGACCCTTTATTTTTCTTCCTACTTTCTGTCCATCAGGATAATAAGTGCATAGTTTTAAATTGGCCCATGACTAAAACACTAGTGGTTTTCAGAAGCATGACAGATGTTATTTACCTTCTCCACATCCTTCTTCAGTTTAGGTTGGCTTATGTGGCTCCTGAATCTAGAGTAGTTGGAGCAGGAGAATTAGTGGACCATCCAAAGAAAATTGCTCTGAATTACCTTAAGAGTTTCTTTTTTGTTGACTTATTTGTAGCATTGCCACTTCCTCAAATTATAGTTCTATTTATACTACCAAAATCACTAGGATCGTCTGGAGCAAACTACGCAAAAAATCTTTTACGTGCAACAGTTGTTGTGCAATACATACCCAGATTGTTTAGATTTTTGCCACTTCTGGTTGGTCAGTCTCCAAATGGCTTCATATTTGAGACTGCATGGGCCAATTTTGTTCTCAATCTTTTCACGTTCATGTTGTCTGGCCACGTCATCGGCTCTTTATGGTACCTCTTTGGATTACAGAGGGTCAACGAATGTCTTCGAAGTGCCTGCCGAAACTCTGGAATTCAATCATGCTCGACATTTATAGATTGTGGACATGGGGATGATGATAAAAGATTTGATCATTATCCAACTTGGAACAGCTGGAAAAACAATGGTAATGCTACCTCTTGCTTTACTTCAAATGGACGTCCTAACGGAATTTACATTCAAGCTGTCCGTCTAGCCGCGCAAAGTAGTACGACCCGAAGATACGTTTACTCTCTTTTTTGGGGATTTCAGCAAATCAGTACTCTTGCTGGGAATCAAGTTCCAAGCTTTTCTGTGGCTGAAGTTCTTTTCACTATGGCAATTATTGGACTCGGTCTTTTGTTATTTGCTCTACTTATTGGAAATATGCAAAACTTCCTCCAGGCTCTCGGTCAAAGGAGGTTACAAATGTCATTAAGACGGCGTGACGTCGAGCAGTGGATGGCACATCGGCGTTTGCCCGTCGAACTCAAAAAGCAAGTACGGGAAGCCGAAAGGTACAATTGGGCTGCAACGAGAGGCGTAAACGAAGAAACACTCTTGGTGAATTTGCCCGAAGATCTTCAAAGAGATATACGACGCCATCTCTTCACGTTTCTAAAGAAAGTTAGGATTTTTTCATTGATGGACGAACCGATTTTAGATTCGATACGGGAGAAACTGAAACAAAGGACGTATATACAAGGAAGTGAAGTTTTTTTCAAAGGCGGTCTTGTCGAGAAGATGGTTTTCATCGTTAGAGGAAAAATGGAGAGTTTGGGGGCCGACGGGATCGTGGTCCCATTGTTGGAAGGAGACGTTTGTGGGGAAGAACTTCTAGCATGGTGTCTTGAACATTCTTCCATGAATAGAGATGGAAAAAGAACTGGCATTGCCGGACCGAGATTGGTCAGCACTCGGACGGTGAGTTGCTTGACGAATGTGGAAGCGTTTTCTCTCCACGTTGCCGATCTTGAACAAGTGACGAGTCTTTTTGCAAGATTCTTGCGAAATCATCGTGTTCAAGGAGCCATACGATATGAATCTCCCTACTGGAGAAGCTTAGCAGCAAATCGGATTCAAGTCGCATGGAGATACCGGAAAAAGCGTAGAATTCGAGCCGACTCGTGTTGA 2199 41.7 MAGVDKDDVPILSDTNPSLYDEQMNSQFQSFNSASRSPSISYECELTGYTGPLQSERRTPFPQMRGKEPTDENIPSWEGKSRAGWSNRNNDGKNQHLLRSGRLGQCSDPYCTTCPTYNVKTAQQKSSRGSGLFEHKFHNALYKGWARKFWSCMNPYIPRVMNPHTKIIQKWNKFFVIACLVAIFFDPLFFFLLSVHQDNKCIVLNWPMTKTLVVFRSMTDVIYLLHILLQFRLAYVAPESRVVGAGELVDHPKKIALNYLKSFFFVDLFVALPLPQIIVLFILPKSLGSSGANYAKNLLRATVVVQYIPRLFRFLPLLVGQSPNGFIFETAWANFVLNLFTFMLSGHVIGSLWYLFGLQRVNECLRSACRNSGIQSCSTFIDCGHGDDDKRFDHYPTWNSWKNNGNATSCFTSNGRPNGIYIQAVRLAAQSSTTRRYVYSLFWGFQQISTLAGNQVPSFSVAEVLFTMAIIGLGLLLFALLIGNMQNFLQALGQRRLQMSLRRRDVEQWMAHRRLPVELKKQVREAERYNWAATRGVNEETLLVNLPEDLQRDIRRHLFTFLKKVRIFSLMDEPILDSIREKLKQRTYIQGSEVFFKGGLVEKMVFIVRGKMESLGADGIVVPLLEGDVCGEELLAWCLEHSSMNRDGKRTGIAGPRLVSTRTVSCLTNVEAFSLHVADLEQVTSLFARFLRNHRVQGAIRYESPYWRSLAANRIQVAWRYRKKRRIRADSC 732
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 45683027 45688452 - Bma008631.2 Bma12g01266 92692
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma12g01266 732 MobiDBLite consensus disorder prediction 80 96 - -
Bma12g01266 732 MobiDBLite consensus disorder prediction 51 96 - -
Bma12g01266 732 Gene3D - 173 492 - -
Bma12g01266 732 SUPERFAMILY cAMP-binding domain-like 494 691 IPR018490 -
Bma12g01266 732 CDD CAP_ED 567 683 IPR000595 -
Bma12g01266 732 MobiDBLite consensus disorder prediction 61 75 - -
Bma12g01266 732 ProSiteProfiles cAMP/cGMP binding motif profile. 567 635 IPR000595 -
Bma12g01266 732 SMART cnmp_10 567 702 IPR000595 -
Bma12g01266 732 SUPERFAMILY Voltage-gated potassium channels 163 496 - -
Bma12g01266 732 Gene3D Helix hairpin bin 494 559 - -
Bma12g01266 732 Pfam Ion transport protein 171 495 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Bma12g01266 732 Gene3D Jelly Rolls 565 689 IPR014710 -
Bma12g01266 732 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 5 730 - -
Bma12g01266 732 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 20, CHLOROPLASTIC-RELATED 5 730 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma12g01266 Bma-Chr12:45683027 Bma11g00180 Bma-Chr11:1621434 1.15E-139 dispersed
Bma12g01266 Bma-Chr12:45683027 Bma12g01267 Bma-Chr12:45691879 0 tandem
Bma08g00117 Bma-Chr8:1454981 Bma12g01266 Bma-Chr12:45683027 0 transposed
Bma12g01208 Bma-Chr12:45032197 Bma12g01266 Bma-Chr12:45683027 0 transposed
Bma12g01266 Bma-Chr12:45683027 Bma08g00128 Bma-Chr8:1666230 3.16E-53 wgd
Bma12g01266 Bma-Chr12:45683027 Bma08g00116 Bma-Chr8:1454119 4.82E-54 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma12g01266 K05391 - qsu:112012074 1041.95