Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma12g01267 ATGGCTGGTGTTGATAAAGATGATGTTCCAATGCTATCAGACACAAACCCATCATTATATGATGAACAAATGAATTCTCGATTTCAGTCATTCAATTCAGCTTCAAGAAGTTCGTCAATTTCAGTTCCAATCAATATCATTTCTACCTACGAGTGCGAACTCGCTGGCTATACCGGCCCTCTACAGAGTGAAAGAAGAACTCCTTTTCCACAGATGAGGGGAAAAGAACCAACTGCCAAAAATATTCGATCTTGGGAAGGAAAGAGCAGGGCAGGTTGGTCCAATAGAAACAATGATGGAAAAAATCAACATTTATTGCAGTCTGGTCGGTTGGGACTGTGTAGTGATCCTTATTGCACAACTTGTCCAACCTACAATGTTAAAAATGCACAGCAGAAGAGTTCCAGAGGCTCTGGCTTATTTGAACACAAGTTTCATAATGCTCTTTACAAAGGCTGGGCTAGGAAGTTTTGGTCCTTTATGAATCCATATATTCCAGGAGTGATGAATCCTCATACAAAGATTATCCAAAAGTGGAACAAGTTTTTCGTTATTGCTTGCTTAGTGGCGATTTTTTTCGACCCTTTATTTTTCTTCCTACTTAAAGTCCATCAGGATAATAAGTGCATAGTTTTAGATTGGCCCATGACTAAAGCACTGGTGGTTTTCAGAAGCATGACAGATTTTATTTACCTTCTCCACATCCTTCTTCAGTTTAGGTTGGCTTATGTGGCTCCTGAATCTAGAGTAGTTGGAGCAGGAGAATTAGTGGACCATCCAAAGAAAATTGCTCTGAATTACCTTAAGAGTTTCTTTTTGGTTGACTTATTTGTAGCATTGCCGCTTCCTCAAATTATAGTTCTATTTGTACTACCAAAATCGCTAGGATCGTCTGGAGCAAACTACGCAAAAAATCTTTTACGTGCAACAGTTCTTGTGCAATACATACCCAGATTGTTTAGATCTTTGCCACTTCTGGTTGGTCAGTCTCCAAATGGCTTCATATTTGAGACTGCATGGGCCAATTTTGTTCTCAATCTTTTCACGTTCATGTTGTCTGGCCACGTCATCGGCTCTTTATGGTACCTCTTTGGATTACAGAGGGTCAACGAATGTCTTCGATTTGCCTGCCAAAACTCTGGAATTCAATTGTGCGCGACATTTATAGATTGTGGACATGGGGATGATGTTAACAGATTTGATCGTTATCCAACTTGGAACAGCTGGAAAAGCAATGATAATGCTACCTCTTGCTTTACTTCAGATGGATATCCTTACGGAATTTACATTCAAGCTGTCAGTCTAGTCTCGCAAAGTAGTACGACCCGAAGATACGTTTACTCCCTTTTTTGGGGATTTCAGCAAATCAGTACTCTTGCTGGGAATCAAGTTCCAAGCTTTTTTGTGTGGGAAGTTCTTTTCACTATGGCCATTATTGGACTTGGTCTTTTGTTATTTGCTCTACTTATTGGAAATATGCAAAACTTCCTCCAGGCTCTTGGTCAAAGGAGGTTACAAATGTCATTAAGACGGCGTGACGTCGAGCAGTGGATGGCACATCGGCGTTTGCCCGTCGAACTCAAAAAGCAAGTTCGGGAAGCCGAAAGGTACAGTTGGGCTGCAACGAGAGGCGTAAATGAAGAATCACTCTTGGTGAATTTGCCCGAAGATCTTCAAAGAGATATAAGACGCCATCTCTTCACTTTCCTAAAGAAAGTTAGGATTTTTTCGTTGATGGACGAACCGATTTTAGATTCGATACGGGAGAAACTGAAACAAAGGACGTATATACAAGGAAGTGAAGTTTTTTTCAAAGGCGGTCTTGTCGAGAAGATGGTTTTCATCGTTAGAGGAAAAATGGAGAGTTTGGGGGCCGATGGGATCGTGGTCCCGTTGTCGGAAGGAGACGTTTGTGGGGAAGAACTTTTAGCATGGTGTCTTGAACATTCTTCCTTGAATAGAGACGGAAAAAGAAGTGGCATCGCCGGACCGAGATTGGTCAGCACTCGAAAGGTGAGTTGCTTGACGAATGTGGAAGCGTTTTCTCTCCACGTTGCCGATCTTGAACAAGTGACGAGTCTTTTTGCAAGATTCTTGCGAAATCATCGTGTTCAAGGAGCCATTCGATATGAATCTCCCTACTGGAGAAGCTTAGCAGCAAATCGGATTCAAGTCGCATGGAGATACCGGAAAAAGCGTCGAATTCGAGCCGACTCGTGTTGA 2223 41.93 MAGVDKDDVPMLSDTNPSLYDEQMNSRFQSFNSASRSSSISVPINIISTYECELAGYTGPLQSERRTPFPQMRGKEPTAKNIRSWEGKSRAGWSNRNNDGKNQHLLQSGRLGLCSDPYCTTCPTYNVKNAQQKSSRGSGLFEHKFHNALYKGWARKFWSFMNPYIPGVMNPHTKIIQKWNKFFVIACLVAIFFDPLFFFLLKVHQDNKCIVLDWPMTKALVVFRSMTDFIYLLHILLQFRLAYVAPESRVVGAGELVDHPKKIALNYLKSFFLVDLFVALPLPQIIVLFVLPKSLGSSGANYAKNLLRATVLVQYIPRLFRSLPLLVGQSPNGFIFETAWANFVLNLFTFMLSGHVIGSLWYLFGLQRVNECLRFACQNSGIQLCATFIDCGHGDDVNRFDRYPTWNSWKSNDNATSCFTSDGYPYGIYIQAVSLVSQSSTTRRYVYSLFWGFQQISTLAGNQVPSFFVWEVLFTMAIIGLGLLLFALLIGNMQNFLQALGQRRLQMSLRRRDVEQWMAHRRLPVELKKQVREAERYSWAATRGVNEESLLVNLPEDLQRDIRRHLFTFLKKVRIFSLMDEPILDSIREKLKQRTYIQGSEVFFKGGLVEKMVFIVRGKMESLGADGIVVPLSEGDVCGEELLAWCLEHSSLNRDGKRSGIAGPRLVSTRKVSCLTNVEAFSLHVADLEQVTSLFARFLRNHRVQGAIRYESPYWRSLAANRIQVAWRYRKKRRIRADSC 740
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 45691879 45702516 - Bma008632.1 Bma12g01267 92693
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma12g01267 740 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 20, CHLOROPLASTIC-RELATED 5 738 - -
Bma12g01267 740 MobiDBLite consensus disorder prediction 1 20 - -
Bma12g01267 740 SUPERFAMILY Voltage-gated potassium channels 171 504 - -
Bma12g01267 740 CDD CAP_ED 575 691 IPR000595 -
Bma12g01267 740 Gene3D Jelly Rolls 573 697 IPR014710 -
Bma12g01267 740 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 5 738 - -
Bma12g01267 740 ProSiteProfiles cAMP/cGMP binding motif profile. 575 643 IPR000595 -
Bma12g01267 740 Gene3D - 181 500 - -
Bma12g01267 740 MobiDBLite consensus disorder prediction 63 99 - -
Bma12g01267 740 SUPERFAMILY cAMP-binding domain-like 502 697 IPR018490 -
Bma12g01267 740 SMART cnmp_10 575 710 IPR000595 -
Bma12g01267 740 Pfam Ion transport protein 179 503 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Bma12g01267 740 Gene3D Helix hairpin bin 502 567 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma08g00117 Bma-Chr8:1454981 Bma12g01267 Bma-Chr12:45691879 0 dispersed
Bma12g01208 Bma-Chr12:45032197 Bma12g01267 Bma-Chr12:45691879 0 dispersed
Bma12g01267 Bma-Chr12:45691879 Bma11g00180 Bma-Chr11:1621434 8.00E-139 dispersed
Bma12g01266 Bma-Chr12:45683027 Bma12g01267 Bma-Chr12:45691879 0 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma12g01267 K05391 - jre:109012085 1050.81