Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma12g01270 ATGGTGCTGACGACGACCTCGTCTTACTCTGATGATAGTATCAACTCCACCTTTGCTTCCAGATACGTCAGAATTCCTCTACCGAAATTCAAGATGGGGGAAAATCAAATACCAAAAGAAGCGGCATATCAAATAATAAACGACGAGTTGATGTTGGATGGAGCGCCGAGATTAAACCTCGCCTCTTTTGTGACCACTTGGATGGAGCCAGAGTGCGACAAGCTGATCATGGCTTCTATGAACAAGAACTACGTTGACATGGATGAGTACCCTGTCACCACTGAGCTCCAGAATCGTTGCGTGAATATTATTGCCAACCTATTTAATGCACCTGTTAAAGAAGATGAAGCTGCAGTCGGCGTGGGTACTGTAGGTTCATCAGAGGCAATAATGCTGGCTGGCCTTGCTTTTAAAAGGAAATGGCAGCAAAAGAGAAAATCAGAAGGCCGACCATTTGATAAACCCAACATAGTATGCTGGGAGAAGTTTGCAAGGTACTTCGAGGTGGAGCTGAAGGAGGTCAAACTGTCTGAAGGATTTTACGTTATGGACCCTGTAAAAGCAGTTGAAATGGTGGATGAAAACACCATCTGCGTTGCAGCTATTCTGGGCTCGACACTGACCGGAGAGTTTGAAGACGTTAAACTTCTTAACGAGCTTCTCACTATGAAGAACAAGGAGACAGGATGGGACACCCCAATTCACGTTGATGCTGCTAGTGGAGGATTTATAGCTCCATTTCTTTACCCTGAGCTCGAGTGGGATTTTCGATTGCCATTAGTGAAGAGTATTAATGTCAGTGGCCACAAGTATGGCCTTGTCTACCCTGGTGTTGGTTGGGTTGTGTGGAGAAGTAAAGAAGACTTGCCCGAAGAACTTATATTTCATATTAACTATCTTGGATCTGATCAACCCACTTTCACCCTCAACTTCTCCAAAGGCTCGAGCCAGATTATTGCTCAGTATTATCAGTTCATAAGACTCGGATTTGAGGGTTACAAGAACATTATGAAGAATTGCATAGAAAATTCAAGAGTTTTGAAAGAAGGAATAGAAAAAATGGGAAAATTCACGATTCTCTCCAAAGATGTTGGAGTTCCCCTTGTCGCTTTCTCTCTAAAAGACAGTAAAAACTACACAGTATTTGACATAGCAGAGAGTTTGAGAAGGTATGGGTGGATTGTACCGGCATATACGATGCCACCAAATGCTGAGAACATAGCTGTTCTAAGAGTGGTGATAAGGGAGGACTTCAGCTGTGGCTTGGCGGATAGGCTTATATCAGACATTGAGAAAGTTTTGAAGGAACTGGGAGGGCCGTCTAGCCGGATGTCTATAAAATCAGCTCTTGTTGAAGCCAATGTTGAAGAAGCAGAGAATGGTGAAAAAGGTGGTTCAGAGACCGTTAAAAAGAGTGTGAAAGAGATTGAGAAGGAGGTTTTTACTTACTGGAAGAAGCTTGTGGATGGGAAGAAAACTGGGGTCTGCTAA 1491 43.39 MVLTTTSSYSDDSINSTFASRYVRIPLPKFKMGENQIPKEAAYQIINDELMLDGAPRLNLASFVTTWMEPECDKLIMASMNKNYVDMDEYPVTTELQNRCVNIIANLFNAPVKEDEAAVGVGTVGSSEAIMLAGLAFKRKWQQKRKSEGRPFDKPNIVCWEKFARYFEVELKEVKLSEGFYVMDPVKAVEMVDENTICVAAILGSTLTGEFEDVKLLNELLTMKNKETGWDTPIHVDAASGGFIAPFLYPELEWDFRLPLVKSINVSGHKYGLVYPGVGWVVWRSKEDLPEELIFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEGYKNIMKNCIENSRVLKEGIEKMGKFTILSKDVGVPLVAFSLKDSKNYTVFDIAESLRRYGWIVPAYTMPPNAENIAVLRVVIREDFSCGLADRLISDIEKVLKELGGPSSRMSIKSALVEANVEEAENGEKGGSETVKKSVKEIEKEVFTYWKKLVDGKKTGVC 496
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 45712232 45716127 + Bma008635.1 Bma12g01270 92696
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma12g01270 496 Gene3D - 354 439 - -
Bma12g01270 496 Gene3D - 1 65 - -
Bma12g01270 496 PANTHER GLUTAMATE DECARBOXYLASE 1 496 IPR010107 GO:0004351|GO:0006536|GO:0030170
Bma12g01270 496 TIGRFAM Glu-decarb-GAD: glutamate decarboxylase 16 437 IPR010107 GO:0004351|GO:0006536|GO:0030170
Bma12g01270 496 SUPERFAMILY PLP-dependent transferases 13 437 IPR015424 -
Bma12g01270 496 CDD DOPA_deC_like 59 432 - -
Bma12g01270 496 Gene3D - 66 353 IPR015421 GO:0003824
Bma12g01270 496 PANTHER GLUTAMATE DECARBOXYLASE 1 496 - -
Bma12g01270 496 Pfam Pyridoxal-dependent decarboxylase conserved domain 38 374 IPR002129 GO:0016830|GO:0019752|GO:0030170
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma02g00148 Bma-Chr2:1309261 Bma12g01270 Bma-Chr12:45712232 1.89E-06 dispersed
Bma12g01211 Bma-Chr12:45051671 Bma12g01270 Bma-Chr12:45712232 0 dispersed
Bma12g01270 Bma-Chr12:45712232 Bma13g00281 Bma-Chr13:4759971 0 dispersed
Bma12g01270 Bma-Chr12:45712232 Bma02g00560 Bma-Chr2:11649214 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma12g01270 K01580 - qsu:112038575 806.594