Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma12g01273 ATGGATAAGGGTTCTTATTTATTTAATGTGGTGCCTGCAGATGTGGTGACTGAGTTCATTGAGGGTTTGGTGGAATCATATCCTGGGTTGCAGTATTTGGATGGTTTTCCTGAGGTGAAAGTTGTTATACGAGCTGATGTTTCAGCTGCGACTTATGATAAAGTTGCAGTAATATCAGGGGGTGGAAGTGGTCATGAGCCAGCACATGCTGGATTTGTTGGGGAAGGAATGCTGACAGCAGCTATTTGTGGAGATGTTTTTGCCTCTCCAACAGTTGATTCAATTCTTGCTGGAATCCGGGCAGTAACTGGTCAAATGGGATGTCTTCTTATTGTTACGAATTATACTGGTGATCGTTTAAATTTTGGTTTGGCTGCTGAACAAGCAAAATCTGAAGGATATAAAGTAGAGACTGTTATTGTCGGAGATGATTGCGCATTGCCTCCACGTCGAGGCATCACTGGCCGTAGAGGTTTGGCTGGGACTCTCCTTATTAATAAGGTAGCTGGTGCTGCTGCTGCTGCTGGACTTTCTCTTGCTGATGTTACCTTAGAAGCAAAACGAGCATCAGAAATGGTTGGGACTATGGGAGTTGCATTATCAGTTTGCACACTGCCAGGCCAGGTTACATCAGATCGTTTGGGCCCTGGGAAAATGGAACTTGGTCTTGGGATTCATGGTGAACCAGGTGCTGCTGTTGCTGACATCCAGCCTGTGGATGTTATTGTATCTCATGTTTTAAATCAAATTTTGTCAACGGAAACCAACTATGTTCCTATAACACGAGGTAGTAGGGTGGTGCTCATGGTCAATGGGTTGGGTGCCACTCCAGTAATGGAACTAATGATTACGGCAGGGAAAGCTGTTCCTAAGTTGCAGCTGGAACATGGACTGGCTGTTGACAGAGTGTACACGGGATCATTTATGACTTCTCTTGATATGGCAGGTTTCTCGATTACAATCATGAAGGCAGATCAAACAACTTTGCAACGTTTGGATGCTGCAACTAAGGCTCCATCTTGGCCTGTTGGTGTTGATGGTTTTCACCTGCCTGCTAAGATACCTGTTCCCATGCCTCCTTCCCATTCCACAAAAAGTGATGAGACATTTGGTAGGCCACTTCAACTGAATCCACAAGGTTATATTCTTGAGGCTGCTATTGAGGCTGCTGCTAATGCTGTTATCAATCTTAAGGACAGTTTGAATGAGTGGGATAGCAAAGTAGGTGATGGTGACTGTGGTTCAACTATGCATAGGGGTGCATCAGCAATCCTGGAGGACATGAAAAGCTATCCTCTAAATGATGCTGCTGAAACGGTGAATGAAATTGGCACATCAATTCGAAGAGTTATGGGTGGAACAAGTGGGATCTTATACAATATATTCTTCAAGGCAGCATATGCTAAATTGAAAGCCAGCAATCAGACATGTGTCACACCCAAATTATGGTGTGAAGCATTGGAAGCTTCTATTGCCGCGATTAGTAAATATGGCGGGGCTAGGGCTGGTTACCGGACATTGTTAGATGCATTAATTCCAGCATCTGAAATGCTTCTAGAGCATATAAATGCTGGAGATGATCCTATCACTGCATTTGTTCTCTCATCTGAAGCAGCTATAGCTGGAGCTGAGTCCACCAAACAGATGCAGGCATTGGCTGGTCGGTCATCCTATGTGTTTGGGGAGATCTTGGCATCGGTTCCAGATCCGGGTGCAATGGCTGTAGCAGCTTGGTACAGAGCAGCAGCTCTAGCTGTTAAGGACAAATGCCAAAATCTGTAA 1782 44.78 MDKGSYLFNVVPADVVTEFIEGLVESYPGLQYLDGFPEVKVVIRADVSAATYDKVAVISGGGSGHEPAHAGFVGEGMLTAAICGDVFASPTVDSILAGIRAVTGQMGCLLIVTNYTGDRLNFGLAAEQAKSEGYKVETVIVGDDCALPPRRGITGRRGLAGTLLINKVAGAAAAAGLSLADVTLEAKRASEMVGTMGVALSVCTLPGQVTSDRLGPGKMELGLGIHGEPGAAVADIQPVDVIVSHVLNQILSTETNYVPITRGSRVVLMVNGLGATPVMELMITAGKAVPKLQLEHGLAVDRVYTGSFMTSLDMAGFSITIMKADQTTLQRLDAATKAPSWPVGVDGFHLPAKIPVPMPPSHSTKSDETFGRPLQLNPQGYILEAAIEAAANAVINLKDSLNEWDSKVGDGDCGSTMHRGASAILEDMKSYPLNDAAETVNEIGTSIRRVMGGTSGILYNIFFKAAYAKLKASNQTCVTPKLWCEALEASIAAISKYGGARAGYRTLLDALIPASEMLLEHINAGDDPITAFVLSSEAAIAGAESTKQMQALAGRSSYVFGEILASVPDPGAMAVAAWYRAAALAVKDKCQNL 593
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 45738861 45748559 + Bma008638.1 Bma12g01273 92699

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma12g01273 593 Gene3D - 381 588 IPR036117 GO:0004371|GO:0006071
Bma12g01273 593 Pfam DAK2 domain 407 582 IPR004007 GO:0004371|GO:0006071
Bma12g01273 593 Gene3D Dihydroxyacetone kinase; domain 1 16 191 - -
Bma12g01273 593 Pfam Dak1 domain 22 339 IPR004006 GO:0004371|GO:0006071
Bma12g01273 593 ProSiteProfiles DhaL domain profile. 381 584 IPR004007 GO:0004371|GO:0006071
Bma12g01273 593 PANTHER DIHYDROXYACETONE KINASE 10 590 - -
Bma12g01273 593 Gene3D Dihydroxyacetone kinase; domain 2 194 346 - -
Bma12g01273 593 SMART Dak2_2 407 584 IPR004007 GO:0004371|GO:0006071
Bma12g01273 593 PANTHER TRIOKINASE/FMN CYCLASE 10 590 - -
Bma12g01273 593 TIGRFAM dak_ATP: dihydroxyacetone kinase 12 582 IPR012734 GO:0004371|GO:0005524|GO:0006071
Bma12g01273 593 SUPERFAMILY DhaL-like 377 582 IPR036117 GO:0004371|GO:0006071
Bma12g01273 593 ProSiteProfiles DhaK domain profile. 11 341 IPR004006 GO:0004371|GO:0006071
Bma12g01273 593 SUPERFAMILY DAK1/DegV-like 14 344 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma12g01273 - - - qsu:112019625 977.237
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g944 . . . . . . . Bma12g01273 Cmo13g01209 . . . . . . . . . . . . . . . . . . . . . . . . . Cone19ag0309 Lsi02g00014 Csa01g00489 Chy12g01592 Cme12g02050 . Blo15g00052 . . Bpe07g01078 . . . . . . . . Car13g00981 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003104 1 8 1 1 2 1 1 3 2 3 1 1 1 1 1 1 2 1 1 3 1 1 1 2 3 1 1 2 3 1 52
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma12g01273 Bma_Chr12 FPKM 8.427095 8.044913 0.867741 1.119824 9.622556 7.989982 9.56905 6.789434 5.151164 5.267992