Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma12g01274 ATGATACCCAATAGCTCTTCCTCCGCTCTCCCTTCTTCTGAACCATTTTCTTGCATTGAAAATGGAGCTCTTAACAAGAGGAAGAGAAGACCGGCTGGAACCCCAGATCCAGATGCAGATGTAGTATCGCTTTCGCCGAAAACATTGCTTGAATCCGATCGATATGTGTGTGAGATCTGCAACCAAGGATTTCAGAGAGATCAGAATCTGCAAATGCATCGCCGGAGACACAAAGTGCCATGGAAATTGCTGAAGAGAGAGTCGCCGTCGGTGAGGAAGAGAGTGTTTGTTTGTCCGGAGCCGAGCTGTCTGCACCACGACCCTTGTCACGCCCTCGGAGATCTCGTCGGAATAAAGAAGCATTTCCGGCGGAAGCACAGCAATCACAAGCAATGGGTTTGTGAAAAATGTTCAAAAGGATATGCAGTTCAATCTGATTACAAAGCTCATCTCAAAACTTGTGGAACTAGAGGCCATTCTTGTGACTGTGGCCGAGTTTTCTCAAGGGTGGAGAGCTTTATAGAACACCAAGATGCTTGCAAAATGGGTTGTCTTCCACAGGAATTGCAGACTCCTCAGCCAGCATGCTTGTCTAGAACAGCTTCAAGTCTCAGCCCATCAAGCGATACCAACTTTGCAGGAGCTCAAATATGGCCATCAATGGCTGCTCATCAGCAAAAACACTCCATCTTCTCCCCTCACTCCAAAGAAAGCACCTCCAAAAAAGATGTTCATGCTTACTATCACAACCTGGATCTTCAGCTCTCTACCACATCCTCAAATCCACCAGATATTTCTCCGGTTTCTCCAAAGAAAGACGAGAGGCGTTCAACCCATTTGCAGCTCTCTATTGGTTCTTCCGATGGCAGCGAGAAGACCGAATCCCACACCGTGAACAACGATGAAAAATCCGGGTGCTTCTCAGTTTCGAGGAATATGAAAGAAGAAGAGCAGCTGAGGATAGTAATGGCGGAAAAGGCATTTGCAGAAGAAACGAGAAAGCAAGCGAAGAGACAGATTGAATTAGCAGAAGAAGAATTTGCAAGTGCAAAGAGAATGAGACAGCAAGCCCAGATTGAGCTGGGAAAAGCTCAAGCTTTGAAAGAACATTCGATCGAGAAGACGAACTCAACTCTTCTGCAAATCACCTGCCAAGCTTGTCAAAGAAGATTTCAATCCAGAAAAACAGTTTTACCATCTTCAGATAATGAAAATTCACTGGTTTTGAGCTACATTTCTTCAGTAATCACAGCAGAAGGCGACCTGCGAGAAAACTATAAACGACTGAACCCATGA 1296 45.37 MIPNSSSSALPSSEPFSCIENGALNKRKRRPAGTPDPDADVVSLSPKTLLESDRYVCEICNQGFQRDQNLQMHRRRHKVPWKLLKRESPSVRKRVFVCPEPSCLHHDPCHALGDLVGIKKHFRRKHSNHKQWVCEKCSKGYAVQSDYKAHLKTCGTRGHSCDCGRVFSRVESFIEHQDACKMGCLPQELQTPQPACLSRTASSLSPSSDTNFAGAQIWPSMAAHQQKHSIFSPHSKESTSKKDVHAYYHNLDLQLSTTSSNPPDISPVSPKKDERRSTHLQLSIGSSDGSEKTESHTVNNDEKSGCFSVSRNMKEEEQLRIVMAEKAFAEETRKQAKRQIELAEEEFASAKRMRQQAQIELGKAQALKEHSIEKTNSTLLQITCQACQRRFQSRKTVLPSSDNENSLVLSYISSVITAEGDLRENYKRLNP 431
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 45750425 45752429 - Bma008639.1 Bma12g01274 92700
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma12g01274 431 ProSitePatterns Zinc finger C2H2 type domain signature. 57 77 IPR013087 -
Bma12g01274 431 MobiDBLite consensus disorder prediction 1 19 - -
Bma12g01274 431 SUPERFAMILY beta-beta-alpha zinc fingers 52 78 IPR036236 -
Bma12g01274 431 PANTHER PROTEIN INDETERMINATE-DOMAIN 16-LIKE 10 418 - -
Bma12g01274 431 Coils Coil 319 360 - -
Bma12g01274 431 PANTHER OS03G0310200 PROTEIN 10 418 IPR039288 GO:0009630
Bma12g01274 431 MobiDBLite consensus disorder prediction 1 42 - -
Bma12g01274 431 Gene3D Classic Zinc Finger 32 97 - -
Bma12g01274 431 Pfam Zinc-finger of C2H2 type 55 73 - -
Bma12g01274 431 SMART c2h2final6 132 159 IPR013087 -
Bma12g01274 431 SMART c2h2final6 55 77 IPR013087 -
Bma12g01274 431 SMART c2h2final6 96 126 IPR013087 -
Bma12g01274 431 MobiDBLite consensus disorder prediction 253 305 - -
Bma12g01274 431 ProSiteProfiles Zinc finger C2H2 type domain profile. 55 77 IPR013087 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma08g00110 Bma-Chr8:1337429 Bma12g01274 Bma-Chr12:45750425 0 dispersed
Bma08g00253 Bma-Chr8:3228300 Bma12g01274 Bma-Chr12:45750425 2.74E-15 dispersed
Bma12g01274 Bma-Chr12:45750425 Bma04g00205 Bma-Chr4:1788132 5.36E-75 dispersed
Bma12g01274 Bma-Chr12:45750425 Bma08g00129 Bma-Chr8:1683055 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
58190 PF12874 zf-met 0.024 CL0361 Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma12g01274 K25871 - qsu:112038406 572.007