Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma12g01277 ATGGAGAAATCGGCGTTGAGAAGGAAGGTGCAGCGGAAATCAAAGATCAGGGGATATAGTCTCAAAGTGGATGCCTTGGACGATATCCTCTCCTTTGTTTCCCGCTTCCCCGGCGCCGAAGACGACGCCATAGATTTGCTTCTTGACCGGCTCGATCGCGAATCCCTCAAATCGTCGATAATTGGCAAGGAAGCGGTGCGTCGGGTCGTTGATCCTCTGGTTAAAGCTGACGCTGCTGTTGATGAAACCCCTGATGCAGCTGCTAGCGCGTCTGATCCTCGTGTAATCGATGCCTTCTTGATTCCAAAGTTCCGTTACGATCCCGTTAAGAAGCTCTTCTACCAGCACACCGGAAGTCTTCCAATTCATGGAGATCCTTCTGCTAAAGCTGCTCTGTACAGAAATAGGTTTCTCTTACTCTCCCAGAGGCTATCTAGGGATCAGCACTTCTCCAAACCTGCATTTCATACCGAATCCTCACATTTTGGAAGCTGTGAGATATCTCCAATTCAGTCTCTAGTTGGACAAACTGGGAGAAAGTGGGTAATGGGTGTAATATCTCAGCTGGAAGATGGCCACTTTTACTTGGAAGATCTCACAGCTGCAGTAGAAATCAATTTGTCTTCTGCTAAGATAACTACAGGGTTTTTCACGGAGAATACCATAGTCGTAGCGGAAGGAGAAATGCTCTTGGAGGGAATTTTTCAGGTCATCACATGTGGATTTCCCCCATTAGAGGATAGAGAGAAATCACTCAAGGTACTCTCAGGGCAGGACTTTTTTGGAGGTGATACTCTTACAAAAGAGGAAACTCTCAGACTCGCAGATTTGGAAAAAAGGTCTGTGAATGACATGTTTGTCATACTGTCAGACGTTTGGCTGGACAGTGAAGAGACCATGGGAAAGCTGGAGACTATTCTCAACGGCTTCGAGAATGTAGAAGTGGTTCCATCCTTATTTGTTTTCATGGGAAATTTTTGTTCTCAGCCATGTAACCTTTCCTTTAATGCCTTTGGAAACCTCAGGATGCAATTTGGAAAGCTAGGGAAAATGATTGCAGCTCATTCACGCCTTGTAGAACATAGTCGATTTGTATTTATACCAGGGCCAGATGACATAGGCCCATCAACAGTTTTACCCAGATGTGCTTTGCCTAAGTATCTAACGCAGGAGCTCCAGACTTGTATCCCAAATGCCATCTTTACAAGTAATCCTTGCAGGATCAAGTTTTATACCCAAGAAATTGTGTTTTTTCGCCATGACCTGCTTTATAGAATGCGTCGTGCCAGTCTCGTGCCCCCTTCTACAGAGGAAACAGATGATCCTTTTGAGCATCTTGTTGCCACCATAACGCATCAGAGCCATCTCTGCCCTCTGCCTCTGACAGTACAACCAATTATCTGGAACTATGATCACGCTCTTCATCTCTATCCAACTCCTCATGCGATAGTTATAGGGGACAGAAGTAAGCAGCAAGCATTCAAGTACACAGGAATAACTTGTTTTAATCCAGGTTCATTTTCAAATGACAGTACTTTTGTGGCGTATCGTCCATGTACTCAAGAAGTTGAATTATCGGCCTTGTAA 1587 44.86 MEKSALRRKVQRKSKIRGYSLKVDALDDILSFVSRFPGAEDDAIDLLLDRLDRESLKSSIIGKEAVRRVVDPLVKADAAVDETPDAAASASDPRVIDAFLIPKFRYDPVKKLFYQHTGSLPIHGDPSAKAALYRNRFLLLSQRLSRDQHFSKPAFHTESSHFGSCEISPIQSLVGQTGRKWVMGVISQLEDGHFYLEDLTAAVEINLSSAKITTGFFTENTIVVAEGEMLLEGIFQVITCGFPPLEDREKSLKVLSGQDFFGGDTLTKEETLRLADLEKRSVNDMFVILSDVWLDSEETMGKLETILNGFENVEVVPSLFVFMGNFCSQPCNLSFNAFGNLRMQFGKLGKMIAAHSRLVEHSRFVFIPGPDDIGPSTVLPRCALPKYLTQELQTCIPNAIFTSNPCRIKFYTQEIVFFRHDLLYRMRRASLVPPSTEETDDPFEHLVATITHQSHLCPLPLTVQPIIWNYDHALHLYPTPHAIVIGDRSKQQAFKYTGITCFNPGSFSNDSTFVAYRPCTQEVELSAL 528
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 45778919 45785657 + Bma008642.1 Bma12g01277 92703
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma12g01277 528 PIRSF DNA_pol_epsilon_2 1 528 IPR016266 GO:0003677|GO:0006261|GO:0008622
Bma12g01277 528 Pfam DNA polymerase alpha/epsilon subunit B 286 492 IPR007185 GO:0003677|GO:0006260
Bma12g01277 528 PANTHER DNA POLYMERASE EPSILON SUBUNIT B 7 527 IPR016266 GO:0003677|GO:0006261|GO:0008622
Bma12g01277 528 Gene3D - 1 72 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma03g00647 Bma-Chr3:5322362 Bma12g01277 Bma-Chr12:45778919 4.58E-118 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma12g01277 K02325 - jre:109012089 857.825