Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma12g01280 TTCACTATGGGATCACAGGTTGATGAGGAAACCGCCTGGCAGCAGGCTTTGAGGAGGATGTTGCCCGTCGGAGCTCCATTGCCTGACGACGACCATCTTGATTACTCTATTGCCGTCGAATACCATGGACCTCCCGTGCCTTACGACCTCCCTCAAGTTGATCCACTTGATATTGGTTCCGTTTCCTTCAGTTCTCCTTCTATGGTTTCGTCTCTGGAGTTCACTTCGATTCCGATCGTCTTTCCGATCGCTCCTCGGGTTTCGAGGTTTGGGCCTATTAGGAATGGAGTCACGTCCAGTGATCCTCGTAGTCCGGTGGAGAGTCAGAGATCGTCTTCGGTTTCCGGACCTCCTTTGGAATCGCATAATGGGGAGGATTTAAATTTCGGAAATGAAAGCGTAGAGGAAACTTTCAACTCTGAGTATTCGGCCCAAGTTTTCTATTCTGCGAGAAATACGTCTGTTATTGATGGGAATCGGTCAAACATTGTTACCTCTGCTACACCCAGGGAATCCGAAGACGATGAAGAAGACGCGCTTTCCTCACCCAGGTCAACTGCTACTCAAGCCATGGCATCAACAGTGGTGGATCGAAGTGGAGAAATGGGATCGAGAAAGAAAGGGATTTGTAGTCGATGCGGGAGAGGGAATAGATTGAAAGATAGGGAAGCTTGTCTGGTGTGCGATGCCAGATATTGCAGCAATTGTTTGCTTAAGGCGATGGGGTCAATGCCTGAAGGACGGAAGTGCGTTGGTTGTATTGGGATGCCCATAAACGAGTTGAAAAGGCCTCTGTTGGGCAAGTGTTCTAGAATGCTGTCAAGGGTGTATATCCCGTTGGAAGTTAAACAAATAATGAAAGCAGAGAAAGAGTGCGCAGCAAATCAGCTTCGTCCTGAGCAGCTGATTGTAAATGGTAGGCAGTTGAGGCAGGATGAATTGGCGGACATTTTGGGCAGTGCCAACCCTCCCCAGAAGTTAAAACCAGGGAGATATTGGTATGATAAGGATTCGGGATTTTGGGGACAGGAGGGAGGAAAACCTGATAGAATTATAAGTGCAAAGCTGAATGTTGGAGGTAAACTTCAACCAGATGCAAGCAATGGGAACACTAAAGTTTTCATAAATGGCCGTGAAATCACGAAGGTTGAGCTCAGAGTATTAAAGGCAACATCCTACTCTATTTATTTCATCGTTTGCTGGCTTCCTGTCACTGTAATTTTTTTCATTTTTATTGCAACTTTCTCTCAGTTGGCCAATGTTCAGTGCCCCCGAGATACTCATTTTTGGGTATATGAAGATGGATCTTATGAGGAAGAAGGTCAAAATAACATTAAAGGGAATATATGGGGAAAGGCGTCTACTCGAATTTTATGTTCATTGCTATCACTGCCTGTACCACCTAGTACTTCAAATGGGACAAAAGATGATCAAGCTAGTTTTTCAGGCAGACCACTTCTTGAATACATGGATAATGGTAAACCTCATCAACTTCTCTTGTTTGGCTTGGAAGGATCTGGAACCAGCACTTTATTCAAGCAGCTTCACACCCAGCATGCCAAGTTTTTATATGGAAACAAGTTCACTTCAGAAGAGCTACAGAACATGAAGCTTATGATCCAAAGCAACCTGTACAAGTATCTTAGCATTCTGCTTGAGGGTCGAGAGCGTTTTGAAGAAGAAGCTATGATTGAAAACGAGCATACTTCTTTAGATTCAGAAACATCTGTTCCAGGTGAAACAGGAACTAATGGAAGTAACCTTTGTAAATATTCAATCAACCCAAGATTCAAGCATTTTTCTGATTGGTTGCTGGACATAATGGCTAGTGGTGACTTGGATGCTTTCTTCCCTGCTGCAACACGTGAATATGCTCCAATTGTAGATGAAGTGTGGAAGGATGCTTCCCTTCAAGAAACATACAAGAGAAGGGAGGAACTACATGGCCTTCCTGATGTTGCAAAGTATTTCTTAGACCGGACAATAGAAATATCAAGCAACGAATATGAACCTTCTGAGAAGGACATTTTATATGCTGAGAGAGTTACCCAGAGGAATGGTATTGCCTTCATGGATTTCTCTTTTGATGATAGGAGCCCCATGTCTGAGCTATACAGCGAAAATATGGAACGCCCAATGGTTTTGTGTTCTAGGTACCAACTAATTCGCATTAATTCTAAAGGACCACATGATGGTTGTAAATGGCTTGAAATGTTTGAAGATGTGAGAGCAGTGATATTTTGTGCTTCCTTGAGCGACTACAACCAGATTTGGTGTGACGGTCCGGGTTCTCCTTGCAATAAAATGCTGGCAAGCAGGAAATTGTTTGAGAGTTTAGTTAGGCATCCTTGTTTTAGAGACGTTCCTTTTATGCTCATATTGAACAAATATGATACTTTTGAGGACAAGATAAGTGAAGCTCCATTGTCAACTTGTGAGTGGTTTAAGGATTTCAGCCCTTTGAAGCCCCACAACAATAATCAGGCCCTGGCTCAACAAGCCTACTACTATGTCGCAGTGAAATTCAAGGAGCTCTACAATTCCATCACCGGCCAAAAGTTGTTTGTTTGTCAAACTCGAGCTCTGGAACGTAACACGGTTGATGAAGCGTTTAAATATATTAGGGAGGTTCTCAAATGGGAAGAGGAGAAAGAAGAAAATATTTACGAAAATGTGGTTGACGATTCATTATACAGCACGGACATTAGCTATTCTCCGTATGTCAGGGAGGAATGA 2736 43.31 FTMGSQVDEETAWQQALRRMLPVGAPLPDDDHLDYSIAVEYHGPPVPYDLPQVDPLDIGSVSFSSPSMVSSLEFTSIPIVFPIAPRVSRFGPIRNGVTSSDPRSPVESQRSSSVSGPPLESHNGEDLNFGNESVEETFNSEYSAQVFYSARNTSVIDGNRSNIVTSATPRESEDDEEDALSSPRSTATQAMASTVVDRSGEMGSRKKGICSRCGRGNRLKDREACLVCDARYCSNCLLKAMGSMPEGRKCVGCIGMPINELKRPLLGKCSRMLSRVYIPLEVKQIMKAEKECAANQLRPEQLIVNGRQLRQDELADILGSANPPQKLKPGRYWYDKDSGFWGQEGGKPDRIISAKLNVGGKLQPDASNGNTKVFINGREITKVELRVLKATSYSIYFIVCWLPVTVIFFIFIATFSQLANVQCPRDTHFWVYEDGSYEEEGQNNIKGNIWGKASTRILCSLLSLPVPPSTSNGTKDDQASFSGRPLLEYMDNGKPHQLLLFGLEGSGTSTLFKQLHTQHAKFLYGNKFTSEELQNMKLMIQSNLYKYLSILLEGRERFEEEAMIENEHTSLDSETSVPGETGTNGSNLCKYSINPRFKHFSDWLLDIMASGDLDAFFPAATREYAPIVDEVWKDASLQETYKRREELHGLPDVAKYFLDRTIEISSNEYEPSEKDILYAERVTQRNGIAFMDFSFDDRSPMSELYSENMERPMVLCSRYQLIRINSKGPHDGCKWLEMFEDVRAVIFCASLSDYNQIWCDGPGSPCNKMLASRKLFESLVRHPCFRDVPFMLILNKYDTFEDKISEAPLSTCEWFKDFSPLKPHNNNQALAQQAYYYVAVKFKELYNSITGQKLFVCQTRALERNTVDEAFKYIREVLKWEEEKEENIYENVVDDSLYSTDISYSPYVREE 911
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 45799646 45806104 + Bma008645.1 Bma12g01280 92706

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma12g01280 911 MobiDBLite consensus disorder prediction 160 198 - -
Bma12g01280 911 Gene3D - 530 681 IPR011025 GO:0007165
Bma12g01280 911 SMART galpha_1 475 888 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
Bma12g01280 911 PANTHER EXTRA-LARGE GUANINE NUCLEOTIDE-BINDING PROTEIN 3-LIKE 20 906 - -
Bma12g01280 911 CDD G-alpha 496 880 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
Bma12g01280 911 MobiDBLite consensus disorder prediction 94 119 - -
Bma12g01280 911 Pfam G-protein alpha subunit 494 877 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
Bma12g01280 911 PANTHER GTP-BINDING PROTEIN ALPHA SUBUNIT 20 906 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
Bma12g01280 911 SUPERFAMILY Transducin (alpha subunit), insertion domain 528 679 IPR011025 GO:0007165
Bma12g01280 911 Gene3D - 710 888 IPR027417 -
Bma12g01280 911 PRINTS Alpha G protein (transducin) signature 742 770 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
Bma12g01280 911 PRINTS Alpha G protein (transducin) signature 669 691 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
Bma12g01280 911 PRINTS Alpha G protein (transducin) signature 790 799 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
Bma12g01280 911 PRINTS Alpha G protein (transducin) signature 497 512 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
Bma12g01280 911 ProSiteProfiles G-alpha domain profile. 494 889 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
Bma12g01280 911 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 494 881 IPR027417 -
Bma12g01280 911 MobiDBLite consensus disorder prediction 94 130 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma12g01280 - - - mcha:111008609 1203.35
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g02190 Bma-Chr1:78793558 Bma12g01280 Bma-Chr12:45799646 1.15E-53 dispersed
Bma09g00324 Bma-Chr9:28103984 Bma12g01280 Bma-Chr12:45799646 0 dispersed
Bma12g00240 Bma-Chr12:3083173 Bma12g01280 Bma-Chr12:45799646 5.32E-13 dispersed
Bma12g01280 Bma-Chr12:45799646 Bma12g00482 Bma-Chr12:13972938 0 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g922 . Blo16g00262 . . . . . Bma12g01280 . . . . . . . . . . . . . . . . . . . . . . . . . . Cone19ag0314 Lsi02g00010 . . Cme12g02053 . . . . Bpe07g01085 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002284 3 3 2 2 2 1 3 1 1 2 1 1 3 2 2 3 1 3 3 1 2 2 2 2 2 2 2 4 2 2 62
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma12g01280 Bma_Chr12 FPKM 50.801388 53.163273 26.848948 27.706989 10.444922 11.673429 10.432253 25.589663 27.228691 30.366167