Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma12g01282 ATGCAGCATCCAAGATATAAACTTTTACTTCCCCTTTCCGTTTTGTTCTTCGTTTTTGCATTTTCGGCTGCAAAATCTGACCTCTCTTCAGATAGAGTGGCTCTTCTGGCTCTGCGCTCCGCTGTTGGCGGCCGAACCACCCTTCTCTGGAACGCCTCGAACCAAGACATTTGCTCTTGGGCTGGTGTAAAATGCCAAGGTAGCCGAGTCGTGGTTCTTCGTCTACCGGGCGACTCTCTCTCCGGCCAATTACCCGCTGGCATTTTCGGCAACCTGACGAATCTTCGCACTCTTAGCCTCCGACTAAATGCCTTGAGGGGTCAGCTGCCTCCAGATCTTGTTGCTTGTACTAACCTGCGCAACCTTTACTTACAGGGTAATAGATTTTCCACTGAAATCCCTGAGTTTTTGTTCCAACTACGTCATCTTGTTCGCCTGAACTTAGCCTCCAACAATTTTTCTGGCGTGATCTCTCCGGGTTTTGATAACCTTACTCGCCTGAAGACTCTGTTCCTCGAAAATAACCGGCTTGCAGGGCCGTTGCCGGAGTTGAAAGTCAAATTCGATCAGTTCAATGTTTCTAACAATTTGTTGAATGGGTCGGTTCCTACTAGCATGCACATATATTCTTCGAGTGCTTTTCTGGGTAATTTTCTTTGTGGGCGTCCTCTTGGACCCTGCTCTGGAAATGCCGCAGAAGCTGTAGCAGGGAACATTTCTATCATTGACAATAATGGACGAAAAAAGTTGTCTGGTGGTGCTATTGCAGGTATTGTGATTGGAGCTGTACTGGGTTTCATTTTGATTGTGATTATTTTTCTGGTTTTATGCCGTAAGAAGAGTAATAAAAAGACGGGTTCAATCGACATTGCTACTGTAAAGAATCGGGAAGTGGAAATGCCTCTTGAAAAGCCAGCGGAAGAGGTCGAAAATGGCAGATACAGCAATGGCTATTCAGTCGGTGCAACAGCTTCGGTTGCCCTGGTTGGGAATGGGAAAAGAGAAGCGAATATGAACGGCGATGGAGGGAAAAAGTTGATGTTTTTTGGTAATCCAGGAAGAGTTTTTGATTTGGAGGATTTGCTGAGAGCTTCAGCTGAAGTTTTGGGGAAAGGAACATTTGGGACTGCTTACAAAGCTGTTTTGGAGATTGGAAGTGTAGTTGCAGTGAAGCGTTTAAAGGATGTGATAATTTCAGAGAGAGAATTTAGAGAGAAGATTGAAGTAGTTGGAGCAATGGAGCATGAGAATTTGGTACCTCTTAGAGCTTATTATTACAGCATAGATGAGAAGCTTCTTGTTTATGATTACATGCCCATGGGAAGCTTATCTGCACTCTTGCATGGTAACAAAGGATCAGGAAGAACTCCTTTGAATTGGGAAATGAGGACCAGCATTGCCCTCGGAGTTGCCCGAGGCATAGAATACCTACACTCTGGAGGCCCAAACATTTCCCACGGAAACATAAAATCATCAAACGTCCTCCTCACCAAATCGCGCGAAGCTCGTGTCTCCGATTTCGGCCTTGCTCATCTTGTCGGACAACCATCGACCCCAAATCGCGTGGTTGGATATCGTGCCCCGGAGGTCAGTGATCCTCGGAAAGTGACTCAAAAGGCTGATGTCTACAGCTTCGGCGTGCTTCTCCTGGAGCTGTTGACTGGTAAAGCTCCTACTCACGCCCTTTTAAACGAGGAAGGAATAGACCTTCCGAGATGGGTTCGATCGGTTGTTCGAGAGGAGTGGACCTCGGAAGTGTTCGATCTCCAGCTTCTCCGGTACCAAAATGTGGAGGAAGAAATGGTTCAGTTGTTGCAATTGGCAGTGGATTGTGCTGATCAGTATCCGGATAGAAGACCTTCGATGGCAGAAGTGAGAAGGCAGATAGAAGAGTTGTGTAAAGCAGATGAGGTGATGGGAGAGTAG 1926 46.47 MQHPRYKLLLPLSVLFFVFAFSAAKSDLSSDRVALLALRSAVGGRTTLLWNASNQDICSWAGVKCQGSRVVVLRLPGDSLSGQLPAGIFGNLTNLRTLSLRLNALRGQLPPDLVACTNLRNLYLQGNRFSTEIPEFLFQLRHLVRLNLASNNFSGVISPGFDNLTRLKTLFLENNRLAGPLPELKVKFDQFNVSNNLLNGSVPTSMHIYSSSAFLGNFLCGRPLGPCSGNAAEAVAGNISIIDNNGRKKLSGGAIAGIVIGAVLGFILIVIIFLVLCRKKSNKKTGSIDIATVKNREVEMPLEKPAEEVENGRYSNGYSVGATASVALVGNGKREANMNGDGGKKLMFFGNPGRVFDLEDLLRASAEVLGKGTFGTAYKAVLEIGSVVAVKRLKDVIISEREFREKIEVVGAMEHENLVPLRAYYYSIDEKLLVYDYMPMGSLSALLHGNKGSGRTPLNWEMRTSIALGVARGIEYLHSGGPNISHGNIKSSNVLLTKSREARVSDFGLAHLVGQPSTPNRVVGYRAPEVSDPRKVTQKADVYSFGVLLLELLTGKAPTHALLNEEGIDLPRWVRSVVREEWTSEVFDLQLLRYQNVEEEMVQLLQLAVDCADQYPDRRPSMAEVRRQIEELCKADEVMGE 641
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 45808296 45810602 - Bma008646.1 Bma12g01282 92708
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma12g01282 641 CDD STKc_IRAK 369 632 - -
Bma12g01282 641 SUPERFAMILY L domain-like 30 207 - -
Bma12g01282 641 ProSitePatterns Protein kinases ATP-binding region signature. 369 391 IPR017441 GO:0005524
Bma12g01282 641 ProSiteProfiles Protein kinase domain profile. 363 632 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bma12g01282 641 Gene3D Transferase(Phosphotransferase) domain 1 438 639 - -
Bma12g01282 641 SUPERFAMILY Protein kinase-like (PK-like) 367 628 IPR011009 -
Bma12g01282 641 Pfam Leucine rich repeat N-terminal domain 29 65 IPR013210 -
Bma12g01282 641 PANTHER OS05G0588300 PROTEIN 12 635 - -
Bma12g01282 641 Pfam Leucine rich repeat 117 177 IPR001611 GO:0005515
Bma12g01282 641 Pfam Protein kinase domain 366 626 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bma12g01282 641 PANTHER INACTIVE RECEPTOR KINASE-RELATED 12 635 - -
Bma12g01282 641 Gene3D Ribonuclease Inhibitor 27 211 IPR032675 -
Bma12g01282 641 Gene3D Phosphorylase Kinase; domain 1 332 437 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g00415 Bma-Chr1:3475932 Bma12g01282 Bma-Chr12:45808296 0 dispersed
Bma02g00519 Bma-Chr2:10346578 Bma12g01282 Bma-Chr12:45808296 2.42E-141 dispersed
Bma08g01217 Bma-Chr8:51208071 Bma12g01282 Bma-Chr12:45808296 4.99E-178 dispersed
Bma10g00070 Bma-Chr10:659422 Bma12g01282 Bma-Chr12:45808296 1.80E-149 dispersed
Bma12g01282 Bma-Chr12:45808296 Bma14g01626 Bma-Chr14:34297610 6.18E-113 dispersed
Bma03g00926 Bma-Chr3:9604459 Bma12g01282 Bma-Chr12:45808296 0 transposed
Bma12g01282 Bma-Chr12:45808296 Bma08g00107 Bma-Chr8:1273070 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
66834 PF00069 Pkinase 3.50E-39 CL0016 Bma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma12g01282 - - csv:101222458 868.611