Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma12g01283 ATGTCTGCCTCTGTAAATTTCACTTCTACCCATTCAACTATCAACGCTATCTCTACGCGCCTTCAAGTTCCTCGCCACGCTATTCGACCCTCTTCTTTATCGTTTCCTCATCCGCCGCTTTCTTTCCCCTCCTCCACCTCCTCATCCAATCATCGTAGATTGTTTCGCGGAAACGGGACATTCTCCAACCCTAATTCTTCTTTCCTTTTCCCTAAATATGTTCGCTTCAATGTAATCAGGGCCGCTAGTAAGGAGTACTACTCTACGCTGAATGTCAGTCGCGATGCGTCGCTGCAAGAAATTAAAAGCTCTTACAGGAAGCTTGCTCGTAAGTACCATCCAGATATGAACAAGGGACCTGGGGCAGAAGAGAAGTTCAAAGAGATTAGTGCTGCATACGAGCAAGTGTATATTCATGACATCTTAGTTCTATTAATTTTGTTACTGCACTTTTTCTCGAGCATTACACTCTTCAATGTGCACCTATGTGATAAAGAAGTAGCTGTGCAGGTCCTGTCTGATGATGAGAAAAGATCTTTATACGTGGATCCTTATGAAGTTTTTGATGCATTCTTTGGCGGAGGAAATGGCCTTTTTGGAGCAAGAGGTGAAACTGGAGGCTTCAATATGCATATGAGTAACAAGGGAGCCCAGAATCTTGATATTAGGTACGACCTGCATCTGAGCTTTGAAGAATCAGTTTTTGGTGGAGAGAGGGAAGTTGAAATTTCTTACTATGGGTCATGTGAAACTTGTGACGGAACAGGTGCTAAATCAAGTAGTTCAATTAAATCTTGTTCTAGTTGTGGCGGGAGAGGGGCTGCAATGAAAACTCAGAAAACACCCTTTGGAATAATGTCCCAGGTAGTATCTACTTGCCCAAACTGTGGTGGTGATGGTAAAATAATCACGGAACATTGTCGCAATTGTGATGGCTATGGCCAACTAAAATTAAAACGAAAAATGAACGTGGTTATCCCAGCAGGAGTTAATGATGGAGCCACGATGCAAATTCAAAGAGAGGGAAGTTTTGACAAGAAAAGGGGAATAGTTGGTGACCTCTATATAGTGCTTCATGTTGAGGAGAAGAGTGGATTTCAGAGGGACGGTCTTAACTTATACTCAAAGATTGACATTGATTATATAGAAGCAATACTAGGGAGCGTGGTAAAGGTAGAGACTGTTGACGGCGTCAAAGATCTACAAATCCCTCCCGGGATTCAGCCAGGGGATACAGTGAAATTGTCACGCATGGGGGTTCCAGACATAAATAAACCTTCTGTACGTGGTGATCATCATTTCATTGTCAATGTAAAGATCCCAAAACAAATCAGGTTAGGTGTTTCATTATAA 1353 42.35 MSASVNFTSTHSTINAISTRLQVPRHAIRPSSLSFPHPPLSFPSSTSSSNHRRLFRGNGTFSNPNSSFLFPKYVRFNVIRAASKEYYSTLNVSRDASLQEIKSSYRKLARKYHPDMNKGPGAEEKFKEISAAYEQVYIHDILVLLILLLHFFSSITLFNVHLCDKEVAVQVLSDDEKRSLYVDPYEVFDAFFGGGNGLFGARGETGGFNMHMSNKGAQNLDIRYDLHLSFEESVFGGEREVEISYYGSCETCDGTGAKSSSSIKSCSSCGGRGAAMKTQKTPFGIMSQVVSTCPNCGGDGKIITEHCRNCDGYGQLKLKRKMNVVIPAGVNDGATMQIQREGSFDKKRGIVGDLYIVLHVEEKSGFQRDGLNLYSKIDIDYIEAILGSVVKVETVDGVKDLQIPPGIQPGDTVKLSRMGVPDINKPSVRGDHHFIVNVKIPKQIRLGVSL 450
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 45813729 45818705 - Bma008647.2 Bma12g01283 92709

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma12g01283 450 SUPERFAMILY Chaperone J-domain 80 135 IPR036869 -
Bma12g01283 450 CDD DnaJ_zf 249 312 IPR001305 GO:0031072|GO:0051082
Bma12g01283 450 Gene3D - 221 356 - -
Bma12g01283 450 PANTHER EXPRESSED PROTEIN 91 444 - -
Bma12g01283 450 CDD DnaJ 85 134 IPR001623 -
Bma12g01283 450 Pfam DnaJ domain 85 135 IPR001623 -
Bma12g01283 450 SUPERFAMILY HSP40/DnaJ peptide-binding domain 366 443 IPR008971 GO:0006457|GO:0051082
Bma12g01283 450 PANTHER DNAJ HOMOLOG 1, MITOCHONDRIAL-RELATED 91 444 - -
Bma12g01283 450 CDD DnaJ_C 221 444 - -
Bma12g01283 450 SMART dnaj_3 84 177 IPR001623 -
Bma12g01283 450 MobiDBLite consensus disorder prediction 32 51 - -
Bma12g01283 450 Hamap Chaperone protein DnaJ [dnaJ]. 82 450 IPR012724 GO:0005524|GO:0006457|GO:0009408|GO:0051082
Bma12g01283 450 Pfam DnaJ central domain 249 313 IPR001305 GO:0031072|GO:0051082
Bma12g01283 450 ProSiteProfiles Zinc finger CR-type profile. 236 319 IPR001305 GO:0031072|GO:0051082
Bma12g01283 450 Gene3D - 249 314 - -
Bma12g01283 450 SUPERFAMILY DnaJ/Hsp40 cysteine-rich domain 236 316 IPR036410 -
Bma12g01283 450 PRINTS DnaJ domain signature 105 120 IPR001623 -
Bma12g01283 450 PRINTS DnaJ domain signature 121 141 IPR001623 -
Bma12g01283 450 PRINTS DnaJ domain signature 87 105 IPR001623 -
Bma12g01283 450 Gene3D - 362 447 - -
Bma12g01283 450 Pfam DnaJ C terminal domain 222 441 IPR002939 -
Bma12g01283 450 ProSiteProfiles dnaJ domain profile. 85 192 IPR001623 -
Bma12g01283 450 SUPERFAMILY HSP40/DnaJ peptide-binding domain 221 361 IPR008971 GO:0006457|GO:0051082
Bma12g01283 450 Gene3D DnaJ domain 75 188 IPR036869 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma12g01283 K03686 dnaJ; molecular chaperone DnaJ - zju:107435129 480.33
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma10g00819 Bma-Chr10:13997174 Bma12g01283 Bma-Chr12:45813729 2.66E-106 dispersed
Bma12g01283 Bma-Chr12:45813729 Bma07g01422 Bma-Chr7:50024557 1.21E-26 dispersed
Bma12g01283 Bma-Chr12:45813729 Bma15g00451 Bma-Chr15:4905920 1.16E-48 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g173 . . Bda06g00866 . . . . Bma12g01283 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Chy12g01585 . . Blo15g00020 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007152 1 1 1 1 0 2 2 2 2 1 2 1 1 1 1 1 2 1 1 2 2 1 1 1 3 1 0 1 0 1 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma12g01283 Bma_Chr12 FPKM 7.128345 8.204726 9.201262 10.268488 6.61029 6.416528 6.935716 6.688403 6.271389 6.530592