Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma12g01285 ATGGCGTCGCTAAATTGGGTCCATATCAGTGGCAAGAACCCAGTTGCTGATTTTTCCAAAACTCGCTCTCCCACGACTCTCAATCGCCTTGGAAGACTCGGGTTGAAGGTGGTTGCTTCTGAAACTCAGGCGGAGCCTGATCTGAGCGTGACCGTCAATGGACTGCACATGCCGAACCCGTTTGTAATCGGGTCGGGTCCTCCCGGGACTAACTATACGGTTATGAAAAGAGCCTTCGATGAAGGCTGGGGTGCCGTGATTGCCAAAACTGTGTCCCTAGATGCAGCAAAAGTTGTGAATGTAACACCGCGATATGCCCGCTTACGAGCCGGAGCAAACGGCTCTGCCAAAGGGCAAATCATTGGATGGGAGAACATCGAGCTCATAAGCGATCGGCCCCTCGAAACCATGTTGAAAGAATTCAAGCAATTGAAAAAGGAATACCCGGATAGAATTCTAATCGCTTCAATCATGGAGGAGTATGATAAATCTGCATGGGAAGAGCTGATTGACCGAGTAGAGCAAACGGGAGTTGATGCTATTGAAATTAATTTCTCGTGCCCCCACGGCATGCCCGAGCGGAAAATGGGCGCTGCAGTTGGACAGGATTGTGCTCTTTTGGAAGAGGTTTGTGGCTGGATCAATGCCAAAGCTACAGTTCCTGTTTGGGCTAAGATGACTCCTAATATAACTGACATTACTCAGCCAGCGAGGGTGTCTTTGAAATCCGGGTGCGAGGGAATAGCTGCTATTAATACAATCATGAGCGTAATGGGAATCAATCTTCAAACAGTCTGTACGGGCGTTATGATGCACGGATACGGCCTCGTGAAGAAGCTGTGTTCCGAGCTGAAGGAGTTTATGAAGACCCATAACTTCTCTACCATTGAAGATTTCAGAGGGGTTTCTCTGCAGTACTTTACGACGCACACCGACTTGGTGCGAAGGCAACAAGAAGCGATACAACTGAGAAAAGCTATAAAGAAAGGTCTGGTGTCGGACAAAGATTGGACGGGAGACGGATTTGTGAATGAAACCGAGAGCATGGTGTCTAACTGA 1059 48.44 MASLNWVHISGKNPVADFSKTRSPTTLNRLGRLGLKVVASETQAEPDLSVTVNGLHMPNPFVIGSGPPGTNYTVMKRAFDEGWGAVIAKTVSLDAAKVVNVTPRYARLRAGANGSAKGQIIGWENIELISDRPLETMLKEFKQLKKEYPDRILIASIMEEYDKSAWEELIDRVEQTGVDAIEINFSCPHGMPERKMGAAVGQDCALLEEVCGWINAKATVPVWAKMTPNITDITQPARVSLKSGCEGIAAINTIMSVMGINLQTVCTGVMMHGYGLVKKLCSELKEFMKTHNFSTIEDFRGVSLQYFTTHTDLVRRQQEAIQLRKAIKKGLVSDKDWTGDGFVNETESMVSN 352
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 45827083 45829177 - Bma008649.1 Bma12g01285 92711

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma12g01285 352 PANTHER BNAA01G27800D PROTEIN 264 352 - -
Bma12g01285 352 PANTHER BNAA01G27800D PROTEIN 17 264 - -
Bma12g01285 352 Gene3D Aldolase class I 260 314 IPR013785 -
Bma12g01285 352 Gene3D Aldolase class I 48 259 IPR013785 -
Bma12g01285 352 PANTHER DIHYDROPYRIMIDINE DEHYDROGENASE [NADP(+)] 264 352 IPR044512 GO:0006210|GO:0006212
Bma12g01285 352 PANTHER DIHYDROPYRIMIDINE DEHYDROGENASE [NADP(+)] 17 264 IPR044512 GO:0006210|GO:0006212
Bma12g01285 352 SUPERFAMILY FMN-linked oxidoreductases 42 304 - -
Bma12g01285 352 Pfam Dihydroorotate dehydrogenase 48 264 IPR005720 GO:0005737|GO:0016627
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma12g01285 K00207 DPYD; dihydropyrimidine dehydrogenase (NADP+) [EC:1.3.1.2] - egr:104425851 491.886
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bma08g00129 Bma12g01285 CCT
Bma08g00129 Bma12g01285 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g159 . . . . Bpe12g00644 . . Bma12g01285 Cmo13g01006 Cmo18g00067 . . . . . Cpe20g00169 . . . . . . . . . . . . . . . . Cone16ag0268 . . Lsi02g00257 Csa01g00739 Chy12g01597 Cme12g01807 Blo13g00122 Blo15g00028 . . . . . Bma08g00129 . . . Cma13g00972 Cma18g00089 Car13g00806 Car18g00079 Cpe09g01101 . . . . . . . . Cla04g01024 Cam04g1066 Cec01g1580 Cco01g1629 Clacu04g1093 Cmu04g1077 Cre01g1377 . Csa01g00488 . .
Vvi17g166 . . Bda06g00868 . . . . Bma12g01285 . Cmo18g00064 . . . . . . . . . . . . . . . . . . . . . . . . . . Csa01g00733 Chy12g01380 Cme12g01813 . Blo15g00017 . . Bpe07g01089 . . . . . . . Cma18g00085 Car13g00813 Car18g00074 Cpe09g01105 . Bhi08g01329 . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008474 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 1 1 1 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma12g01285 Bma_Chr12 FPKM 10.043178 12.230196 19.249884 16.377913 10.100967 12.377296 12.658287 17.221064 16.802637 15.850747