Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Bma13g00044 | ATGTACGGACTGAATCCAGCGGGAAACGGGTCGCAATTAGGGCAGCAGCCGGAATGGAGTGCGGGCGGAGGCGAAACGGGCCTAGAAGAATCTATGTGGTATTTGGGGCTGACAAGTAGAGAATCGTATCCTGAGCGTCCTGGTGTACCTAACTGTGTGTATTATATGCGATCTGGGTTCTGTGGATATGGAAGCAGATGCCGTTTCAATCATCCTCCTGACCGTGCAGCGGTTGCAGCAGCTGTAAGAGCTTCTGGGGATTACCCAGAACGAATAGGGGAACCTGTATGCCAGTATTACTTAAAAACTGGGACATGTAAATTTGGGGCATCCTGTAAGTTTCACCATCCAAAACATGGTGGTGGATCCCTTGGCCAGGCTCCTCTTAATATCCATGGATACCCGCTTCGACCGAGTGAAAGAGAATGCTCCTACTATTTGAAAACGGGGCAGTGCAAATTCGGTCTAACTTGTAAATTCCACCATCCTCAACCAGCTGGCTCATCCACACCAGCCGCTGCACCTCAGTTTTATCCACCAGTGCAGTCTCCTTCAGTTCCTATGCCCGACCAATATGGAGTGGTATCCACTAGCTTGAGGGTAGCCAGGCCACCTCTTTTACATGGTTCTTATGTGCAAGGGACCTATGGTCCTGTTTTGCTTCCCCCAGGAGTTGTTCCAATTCAAGGATGGAGTCCTTATTCAGCACCTGTGAGCCCTGCATTATCTCCTGGTGCTCAACCCACAGTTGGAGCATCTTCTGTTTATGGCGTAGCCCAGCTGTCTTCTACAACACCATCTCTTCCAAGACCCTATCCCTCTTTACCTTTGTCGCGTGGTCCTTCCAGCGGTAATCAAAGGGAACAGTTGTTTCCGGAGAGACCTGGTGAACCAGAATGCCAGTATTACATAAGAACTGGTGATTGCAAGTTTGGGACAGCTTGCCGATATCATCATCCTCACAATCGAATTGTACCAAGGACAAATTGTGTTCTTAGCCCACTTGGCCTTCCCTTGCGACCGGGGGTGCCAGCTTGTACATTTTACTTGCAAAATGGGCACTGCAAATTCGGATCTACCTGTAAATTTGATCATCCGACAGGGACAATGAGATACAGTCCGTCAGCCTCGTCTCTCATTGACATGCCTGTTGCTCCTTATCCTGTTGGGTCTTTGCTGGCCACTTTGGCTCCTTCATCTTCTTCTTCAGAGCTTAATCCAGAGCTGATGTCAGGGTCAAGGAAAGAATCATTTTCAGCTAGATTGCCTTCTTCTGGCAGTACCTCTAGTAGTACAGTTGGTTTAATTTACTCTCAGACTGGATCTGATGTTCAACTTTCTAGCCAAAGTTCTGCTCCTTTGAACAACAGCAGGAATTCTAGACAAGGTGGGGAGCCGCGACATTCTAGTTAG | 1413 | 48.48 | MYGLNPAGNGSQLGQQPEWSAGGGETGLEESMWYLGLTSRESYPERPGVPNCVYYMRSGFCGYGSRCRFNHPPDRAAVAAAVRASGDYPERIGEPVCQYYLKTGTCKFGASCKFHHPKHGGGSLGQAPLNIHGYPLRPSERECSYYLKTGQCKFGLTCKFHHPQPAGSSTPAAAPQFYPPVQSPSVPMPDQYGVVSTSLRVARPPLLHGSYVQGTYGPVLLPPGVVPIQGWSPYSAPVSPALSPGAQPTVGASSVYGVAQLSSTTPSLPRPYPSLPLSRGPSSGNQREQLFPERPGEPECQYYIRTGDCKFGTACRYHHPHNRIVPRTNCVLSPLGLPLRPGVPACTFYLQNGHCKFGSTCKFDHPTGTMRYSPSASSLIDMPVAPYPVGSLLATLAPSSSSSELNPELMSGSRKESFSARLPSSGSTSSSTVGLIYSQTGSDVQLSSQSSAPLNNSRNSRQGGEPRHSS | 470 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
13 | 499466 | 503178 | - | Bma008735.1 | Bma13g00044 | 92773 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Bma13g00044 | 470 | SMART | c3hfinal6 | 46 | 73 | IPR000571 | GO:0046872 | |
Bma13g00044 | 470 | SMART | c3hfinal6 | 340 | 367 | IPR000571 | GO:0046872 | |
Bma13g00044 | 470 | SMART | c3hfinal6 | 91 | 118 | IPR000571 | GO:0046872 | |
Bma13g00044 | 470 | SMART | c3hfinal6 | 294 | 321 | IPR000571 | GO:0046872 | |
Bma13g00044 | 470 | SMART | c3hfinal6 | 137 | 164 | IPR000571 | GO:0046872 | |
Bma13g00044 | 470 | Gene3D | - | 45 | 120 | - | - | |
Bma13g00044 | 470 | Gene3D | - | 293 | 377 | - | - | |
Bma13g00044 | 470 | ProSiteProfiles | Zinc finger C3H1-type profile. | 294 | 322 | IPR000571 | GO:0046872 | |
Bma13g00044 | 470 | SUPERFAMILY | CCCH zinc finger | 94 | 118 | IPR036855 | GO:0046872 | |
Bma13g00044 | 470 | ProSiteProfiles | Zinc finger C3H1-type profile. | 340 | 368 | IPR000571 | GO:0046872 | |
Bma13g00044 | 470 | MobiDBLite | consensus disorder prediction | 264 | 294 | - | - | |
Bma13g00044 | 470 | PANTHER | PROTEIN PHOSPHATASE RELATED | 15 | 450 | - | - | |
Bma13g00044 | 470 | MobiDBLite | consensus disorder prediction | 398 | 464 | - | - | |
Bma13g00044 | 470 | PANTHER | ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 58 | 15 | 450 | - | - | |
Bma13g00044 | 470 | ProSiteProfiles | Zinc finger C3H1-type profile. | 46 | 74 | IPR000571 | GO:0046872 | |
Bma13g00044 | 470 | ProSiteProfiles | Zinc finger C3H1-type profile. | 91 | 119 | IPR000571 | GO:0046872 | |
Bma13g00044 | 470 | MobiDBLite | consensus disorder prediction | 1 | 23 | - | - | |
Bma13g00044 | 470 | ProSiteProfiles | Zinc finger C3H1-type profile. | 137 | 165 | IPR000571 | GO:0046872 | |
Bma13g00044 | 470 | SUPERFAMILY | CCCH zinc finger | 344 | 371 | IPR036855 | GO:0046872 | |
Bma13g00044 | 470 | SUPERFAMILY | CCCH zinc finger | 50 | 74 | IPR036855 | GO:0046872 | |
Bma13g00044 | 470 | Gene3D | - | 125 | 171 | - | - | |
Bma13g00044 | 470 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 94 | 118 | IPR000571 | GO:0046872 | |
Bma13g00044 | 470 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 342 | 366 | IPR000571 | GO:0046872 | |
Bma13g00044 | 470 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 48 | 73 | IPR000571 | GO:0046872 | |
Bma13g00044 | 470 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 140 | 164 | IPR000571 | GO:0046872 | |
Bma13g00044 | 470 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 296 | 320 | IPR000571 | GO:0046872 | |
Bma13g00044 | 470 | SUPERFAMILY | CCCH zinc finger | 299 | 323 | IPR036855 | GO:0046872 | |
Bma13g00044 | 470 | SUPERFAMILY | CCCH zinc finger | 139 | 165 | IPR036855 | GO:0046872 | |
Bma13g00044 | 470 | MobiDBLite | consensus disorder prediction | 398 | 470 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Bma05g01061 | Bma-Chr5:49311291 | Bma13g00044 | Bma-Chr13:499466 | 1.47E-13 | dispersed | |
Bma06g01512 | Bma-Chr6:51579673 | Bma13g00044 | Bma-Chr13:499466 | 1.59E-122 | dispersed | |
Bma13g00044 | Bma-Chr13:499466 | Bma14g01187 | Bma-Chr14:17621737 | 8.77E-123 | dispersed | |
Bma03g00483 | Bma-Chr3:3752240 | Bma13g00044 | Bma-Chr13:499466 | 1.96E-07 | transposed | |
Bma10g01052 | Bma-Chr10:28823741 | Bma13g00044 | Bma-Chr13:499466 | 9.47E-15 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
58193 | PF00642 | zf-CCCH | 6.50E-09 | CL0537 | Bma | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Bma13g00044 | - | - | cpap:110821377 | 749.584 |