Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma13g00044 ATGTACGGACTGAATCCAGCGGGAAACGGGTCGCAATTAGGGCAGCAGCCGGAATGGAGTGCGGGCGGAGGCGAAACGGGCCTAGAAGAATCTATGTGGTATTTGGGGCTGACAAGTAGAGAATCGTATCCTGAGCGTCCTGGTGTACCTAACTGTGTGTATTATATGCGATCTGGGTTCTGTGGATATGGAAGCAGATGCCGTTTCAATCATCCTCCTGACCGTGCAGCGGTTGCAGCAGCTGTAAGAGCTTCTGGGGATTACCCAGAACGAATAGGGGAACCTGTATGCCAGTATTACTTAAAAACTGGGACATGTAAATTTGGGGCATCCTGTAAGTTTCACCATCCAAAACATGGTGGTGGATCCCTTGGCCAGGCTCCTCTTAATATCCATGGATACCCGCTTCGACCGAGTGAAAGAGAATGCTCCTACTATTTGAAAACGGGGCAGTGCAAATTCGGTCTAACTTGTAAATTCCACCATCCTCAACCAGCTGGCTCATCCACACCAGCCGCTGCACCTCAGTTTTATCCACCAGTGCAGTCTCCTTCAGTTCCTATGCCCGACCAATATGGAGTGGTATCCACTAGCTTGAGGGTAGCCAGGCCACCTCTTTTACATGGTTCTTATGTGCAAGGGACCTATGGTCCTGTTTTGCTTCCCCCAGGAGTTGTTCCAATTCAAGGATGGAGTCCTTATTCAGCACCTGTGAGCCCTGCATTATCTCCTGGTGCTCAACCCACAGTTGGAGCATCTTCTGTTTATGGCGTAGCCCAGCTGTCTTCTACAACACCATCTCTTCCAAGACCCTATCCCTCTTTACCTTTGTCGCGTGGTCCTTCCAGCGGTAATCAAAGGGAACAGTTGTTTCCGGAGAGACCTGGTGAACCAGAATGCCAGTATTACATAAGAACTGGTGATTGCAAGTTTGGGACAGCTTGCCGATATCATCATCCTCACAATCGAATTGTACCAAGGACAAATTGTGTTCTTAGCCCACTTGGCCTTCCCTTGCGACCGGGGGTGCCAGCTTGTACATTTTACTTGCAAAATGGGCACTGCAAATTCGGATCTACCTGTAAATTTGATCATCCGACAGGGACAATGAGATACAGTCCGTCAGCCTCGTCTCTCATTGACATGCCTGTTGCTCCTTATCCTGTTGGGTCTTTGCTGGCCACTTTGGCTCCTTCATCTTCTTCTTCAGAGCTTAATCCAGAGCTGATGTCAGGGTCAAGGAAAGAATCATTTTCAGCTAGATTGCCTTCTTCTGGCAGTACCTCTAGTAGTACAGTTGGTTTAATTTACTCTCAGACTGGATCTGATGTTCAACTTTCTAGCCAAAGTTCTGCTCCTTTGAACAACAGCAGGAATTCTAGACAAGGTGGGGAGCCGCGACATTCTAGTTAG 1413 48.48 MYGLNPAGNGSQLGQQPEWSAGGGETGLEESMWYLGLTSRESYPERPGVPNCVYYMRSGFCGYGSRCRFNHPPDRAAVAAAVRASGDYPERIGEPVCQYYLKTGTCKFGASCKFHHPKHGGGSLGQAPLNIHGYPLRPSERECSYYLKTGQCKFGLTCKFHHPQPAGSSTPAAAPQFYPPVQSPSVPMPDQYGVVSTSLRVARPPLLHGSYVQGTYGPVLLPPGVVPIQGWSPYSAPVSPALSPGAQPTVGASSVYGVAQLSSTTPSLPRPYPSLPLSRGPSSGNQREQLFPERPGEPECQYYIRTGDCKFGTACRYHHPHNRIVPRTNCVLSPLGLPLRPGVPACTFYLQNGHCKFGSTCKFDHPTGTMRYSPSASSLIDMPVAPYPVGSLLATLAPSSSSSELNPELMSGSRKESFSARLPSSGSTSSSTVGLIYSQTGSDVQLSSQSSAPLNNSRNSRQGGEPRHSS 470
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 499466 503178 - Bma008735.1 Bma13g00044 92773
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma13g00044 470 SMART c3hfinal6 46 73 IPR000571 GO:0046872
Bma13g00044 470 SMART c3hfinal6 340 367 IPR000571 GO:0046872
Bma13g00044 470 SMART c3hfinal6 91 118 IPR000571 GO:0046872
Bma13g00044 470 SMART c3hfinal6 294 321 IPR000571 GO:0046872
Bma13g00044 470 SMART c3hfinal6 137 164 IPR000571 GO:0046872
Bma13g00044 470 Gene3D - 45 120 - -
Bma13g00044 470 Gene3D - 293 377 - -
Bma13g00044 470 ProSiteProfiles Zinc finger C3H1-type profile. 294 322 IPR000571 GO:0046872
Bma13g00044 470 SUPERFAMILY CCCH zinc finger 94 118 IPR036855 GO:0046872
Bma13g00044 470 ProSiteProfiles Zinc finger C3H1-type profile. 340 368 IPR000571 GO:0046872
Bma13g00044 470 MobiDBLite consensus disorder prediction 264 294 - -
Bma13g00044 470 PANTHER PROTEIN PHOSPHATASE RELATED 15 450 - -
Bma13g00044 470 MobiDBLite consensus disorder prediction 398 464 - -
Bma13g00044 470 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 58 15 450 - -
Bma13g00044 470 ProSiteProfiles Zinc finger C3H1-type profile. 46 74 IPR000571 GO:0046872
Bma13g00044 470 ProSiteProfiles Zinc finger C3H1-type profile. 91 119 IPR000571 GO:0046872
Bma13g00044 470 MobiDBLite consensus disorder prediction 1 23 - -
Bma13g00044 470 ProSiteProfiles Zinc finger C3H1-type profile. 137 165 IPR000571 GO:0046872
Bma13g00044 470 SUPERFAMILY CCCH zinc finger 344 371 IPR036855 GO:0046872
Bma13g00044 470 SUPERFAMILY CCCH zinc finger 50 74 IPR036855 GO:0046872
Bma13g00044 470 Gene3D - 125 171 - -
Bma13g00044 470 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 94 118 IPR000571 GO:0046872
Bma13g00044 470 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 342 366 IPR000571 GO:0046872
Bma13g00044 470 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 48 73 IPR000571 GO:0046872
Bma13g00044 470 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 140 164 IPR000571 GO:0046872
Bma13g00044 470 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 296 320 IPR000571 GO:0046872
Bma13g00044 470 SUPERFAMILY CCCH zinc finger 299 323 IPR036855 GO:0046872
Bma13g00044 470 SUPERFAMILY CCCH zinc finger 139 165 IPR036855 GO:0046872
Bma13g00044 470 MobiDBLite consensus disorder prediction 398 470 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma05g01061 Bma-Chr5:49311291 Bma13g00044 Bma-Chr13:499466 1.47E-13 dispersed
Bma06g01512 Bma-Chr6:51579673 Bma13g00044 Bma-Chr13:499466 1.59E-122 dispersed
Bma13g00044 Bma-Chr13:499466 Bma14g01187 Bma-Chr14:17621737 8.77E-123 dispersed
Bma03g00483 Bma-Chr3:3752240 Bma13g00044 Bma-Chr13:499466 1.96E-07 transposed
Bma10g01052 Bma-Chr10:28823741 Bma13g00044 Bma-Chr13:499466 9.47E-15 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
58193 PF00642 zf-CCCH 6.50E-09 CL0537 Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma13g00044 - - cpap:110821377 749.584