Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma13g00101 GAACAAGTTCCTGCTCTTGAACCTTCCGATCTACATTATTCTCCCACCATTAGCTCCGGCAGCTATGCTGATATCGGACCTCGCCGATTCATGGAAGACGAACACGTACGGATGGATGACCTTTCGTCGGACGCAATAGGCCTGATCAAATTTTCCAAACCAAGTGCTTTCTATGCAGTGTTTGACGGCCATGGCGGAGCTGAAGCGTCAAATTTCGTCAGTAAAAATGTGAAGAGGCTGTTCTTCGAAGACGTCGATTTTCCAAATTCCATGGAAGTAGACGAAGGTTTGGTGGCAGAGGTGGAGAACTCTCTTCGTTGTTCGTTTCGTTTGGCTGATCAAGCTTTAGCAGAGGAAAGTAGTGTGAGTAGCTCTTGTGGCACTACAGCTCTTGCTGCTCTTGTTTTTGGAAGTGTTCTCATCGTGGCAAATGTCGGGGATTGCCGAGCCGTCCTTTGTAGAGGAGGAGAGGCAGTAGACATGTCGAACGATCACAGGCCAACTCATCCCTCCGAAAGGAGACGCGTAGTAGAAATGGGCGGCTTCGTCGATGACGGTTACCTCAACGGCGTGTTATCCGTCACGAGAGCATTAGGGGACTGGGACTTGAAGAAGTTTGCGCGCAATTCCCCCTCACCTCTAATCTCGGAACCGGAAATCATGCACTCGATTCTGACCGAGGAAGACGAGTTTTTGATAATGGGCTGCGACGGAATTTGGGACGTAATGTCCAGTCAACAGGCCGTCACAATGGTTCGTCGTGGGCTCCGCCGACATGGGGACTTAGATCAATGTGCTAGGGATCTTGTACGGGAGGCTCTGAGGCGGAATTCGTTCGACAATCTTACGGTAATTGTTGTGTGCTTCTATGCGATTGATCGGGACGAAATTTACCCGCCTAGGCAGCAGAAATTGAGGTGCTGTAATCTGTCTGCAGAAGCATTTTATAGCCTCAAAAGCTGGTTAGACAGAAGTTGA 978 49.49 EQVPALEPSDLHYSPTISSGSYADIGPRRFMEDEHVRMDDLSSDAIGLIKFSKPSAFYAVFDGHGGAEASNFVSKNVKRLFFEDVDFPNSMEVDEGLVAEVENSLRCSFRLADQALAEESSVSSSCGTTALAALVFGSVLIVANVGDCRAVLCRGGEAVDMSNDHRPTHPSERRRVVEMGGFVDDGYLNGVLSVTRALGDWDLKKFARNSPSPLISEPEIMHSILTEEDEFLIMGCDGIWDVMSSQQAVTMVRRGLRRHGDLDQCARDLVREALRRNSFDNLTVIVVCFYAIDRDEIYPPRQQKLRCCNLSAEAFYSLKSWLDRS 325
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 1054087 1055247 + Bma008794.1 Bma13g00101 92830
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma13g00101 325 ProSiteProfiles PPM-type phosphatase domain profile. 18 289 IPR001932 -
Bma13g00101 325 Pfam Protein phosphatase 2C 28 281 IPR001932 -
Bma13g00101 325 SMART PP2C_4 8 287 IPR001932 -
Bma13g00101 325 SUPERFAMILY PP2C-like 11 289 IPR036457 -
Bma13g00101 325 PANTHER PROTEIN PHOSPHATASE 2C 6 307 IPR015655 GO:0004722|GO:0006470
Bma13g00101 325 SMART PP2C_SIG_2 33 289 IPR001932 -
Bma13g00101 325 CDD PP2Cc 17 289 IPR001932 -
Bma13g00101 325 ProSitePatterns PPM-type phosphatase domain signature. 57 65 IPR000222 GO:0043169
Bma13g00101 325 PANTHER PROTEIN PHOSPHATASE 2C 49-RELATED 6 307 - -
Bma13g00101 325 Gene3D - 8 294 IPR036457 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bma09g00376 Bma13g00101 CCT
Bma09g00376 Bma13g00101 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma02g00942 Bma-Chr2:49321058 Bma13g00101 Bma-Chr13:1054087 1.89E-83 dispersed
Bma09g00376 Bma-Chr9:32498586 Bma13g00101 Bma-Chr13:1054087 3.29E-130 dispersed
Bma11g00622 Bma-Chr11:9801234 Bma13g00101 Bma-Chr13:1054087 2.33E-72 dispersed
Bma13g00101 Bma-Chr13:1054087 Bma04g00107 Bma-Chr4:839888 9.25E-46 dispersed
Bma13g00101 Bma-Chr13:1054087 Bma04g00294 Bma-Chr4:2356598 1.56E-100 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma13g00101 K14803 - pvy:116138071 447.588