Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma13g00108 ATGAGTTCGGTAGAATTAAGAGCCCTTGGGAAGAGGAATTTAGATTGGGATTTGAATGACTGGAAGTGGGATGGAGATCTTTTCATTGCTAGCTCTTTGAATTCAGTGCCATCTGCTACCCTGAGTCGGCAAATATTTCCAATTGGAACAATTCCAGAGACTGGAGGCTCGTCAAACAGCTCCTCATCATGCTCGGATGATGCTAATATGAGAATTGAGAAAGGGAAGAAAGAAATCGAGAAAAGGAGGAGGATTACTGGGTTGGAAGACAGAGCCTTGCATGACGAAACTGGTGGGCTTATTTTAAAGCTCGGTTCTCATGGGTATCCACTTCCTGAGAGGGAATTAGGGAGTTGGGAGGGATGTAATGGAAAGAAGACGAAATTGGTCGGAGGAAGTTCAAATCGTGCAATTTGCCAGGTGGAGGACTGTGGAGCTGATCTGAGCAAGGCCAAAGATTATCACAGGCGACATAAAGTCTGTGAGATGCATTCTAAAGCCAGTAGGGCGCTGGTGGGGAACCTCATGCAGCGTTTCTGTCAACAATGTAGCAGGTTTCATGTTCTTCAAGAGTTTGACGAAGGAAAAAGAAGTTGTCGTAGGCGTTTGGCAGGTCATAACAAGCGAAGAAGAAAAACAAATCCCGAGCCAGCTGCTAATGGAAGCTCCTCAAATGAAGATCAAACCAGTGGCTATCTACTCATTAGCCTGTTGAGAATACTTTCCAACATGCATTCGAATCAATCCGACCAAACCACCTATCAGGATCTGCTATCACATCTTTTGAGGAGCATTGCCGGTCAAAGTACTGAGCACAAGGAGAAAGACATATCTGAACATTTGCAGAATCTGCAAAACGGGATATCAGTTTGTAATTCAGAACTAGCCTCTACTTTTCTTTCAAATGGTGCTCTGGGTCCTTCTATGCCATCAAAACAGCATGCCACTTTGCCATTGTCTGAGATACCATCACAAGGTGTGTTTGCTCAAAATTCCAGAAGTGAAGATACAAAAAAATTTCTTCAATTACGAGATTATTCTGAATGCAATGAGTGTTCTGCAGGGAAAAGCAAGATGAATGACTTTGATTTGAACGACATATACGTTGACTCTGATGATGGAACCGAAGATATAGAGAGATCTGTACTTCCTGTACATTTAGGGGCGAGTTCCCTAGAGTCTCCTTGGGCACAACAAGACTCTCATCAGTCAAGTCCACCTCAAACAAGTGGAAATTCAGATTCAGCATCTGCTCAGTCACCTTCTAGCTCTAGTGGAGAAGCTCAGAGCCGCACGGATCGTATTGTTATTAAACTATTTGGAAAAGTGCCCAGTGATTTTCCTCACGATCTACGAGCACAGGTTCTTGATTGGTTGCAACATAGTCCGACTGACATGGAGAGCTACATTAGACCTGGTTGTGTTGTTCTGACAATTTACCTACGTCAGACAGAAGATGCATGGGATGAACTATGCTATGACCTAAGTTGTGGCTTGAGTAGGCTTCTACAAGGCTCAGATGATGCTTTCTGGAGCACAGGATGGGTTTATGTTAGAATTCAGCATCATTTAGCATTTGTTTTACATGGTCAAGTTGTGGTAGATACGTCCTTAGCACTTCGAAATAACGATTATTGTAACATTGTCTGCGTAAAACCTATTGCCGTATCTGCATCAGAGGGGGTTCAGTTTTTAGTTAGAGGCTCGAATTTGAAGAGGCCTGGAACGAGGTTACTCTGTGCACTTGAAGGGAAGTATCTGACTGAAAAGGTTACTCAAGAATCAACTGATTCTGTTGATGCATTAATGGAGCATAATGAGATCCAATGCATTAGCTTTTCTTGCTCTATTCCCATAGTGAATGGAAGGGGCTTCATTGAGGTTGAAGATCATGGATTCAGCAGCAGCTTTTTTCCATTTATAGTCGCGGAGGATGATGTATGTTCAGACATTCGTGTTCTCGAGACTGAACTGGAGTCGTCGGATATATGCTCAGATGCCATGGGAGCTGCAGTAATGGAAACAAGGGTTCAAGCGATGGATTTTATTCATGAAATGGGATGGCTTCTTCATAGAGAACAACTGAAGTCTAGATTGAGCAATTTGGATCCAAATCCAGATCTTTACCCCTTGAATAGGTTTAAGTGGCTCATGGATTTCTCGATAGACCACAATTGGTGTGCTGTTGTGAGGAAATTATTAAACATTCTTCTTGATGGAAATGTGGATGTTGGAGATCACCCGTCGTCGAACGCTGCCTTATCTGAGATGGGTATTCTTCACCAGGCTGTAAGGAGAAACAGCAAGTCGCTTGTTGAGCTCCTTTTGAGATATAACCCCAGAAAAGCGAGATGCGAAGAAAATGCAGTGGTTGATGGAGGGGTTGAAGGCTTTTTGTTTAGGCCTGATGTTGCTGGACCTGGAGGCTTGACTCCACTTCACATTGCAGCCGGTAAAGACGGGTCTGAGGATGTCCTGGATGCATTAACCGACGATCCCGACATGGTCGGAATTGAAGCATGGAAGAGCACTCGAGACAGTACGGGGTCCACACCCGAAGATTATGCGCGCTTACGTGGCCATTTCTCGTACATCCATCTTGTCCAGAGGAAAATCAATAAGAGGCTTACGCCTGGCCATGTAGTTCTCGACATTCCTACTGTTCTCTCCGAATCTGTGACAAATGTTAAGCAATCCGACAATTTGGGCACTTCTTTCGAGATTGGAACGTCCCAGCCAAGAACCAGTCTTAGGAACTGTAGGTACTGTGATAAGAAACTCACTTATGGAAAATTGAGCAGGTCTCTCGTTTACAGGCCGGCAATGTTGTCGATGGTAGCCATCGCCGCCGTTTGTGTGTGTGTGGCACTTCTGTTCAAGAGCTCGCCGGAAGTTCTTTATTGTTTCCAGCCGTTCAGATGGGAATCGTTAGATTACGGAACAAGCTGA 2949 44.29 MSSVELRALGKRNLDWDLNDWKWDGDLFIASSLNSVPSATLSRQIFPIGTIPETGGSSNSSSSCSDDANMRIEKGKKEIEKRRRITGLEDRALHDETGGLILKLGSHGYPLPERELGSWEGCNGKKTKLVGGSSNRAICQVEDCGADLSKAKDYHRRHKVCEMHSKASRALVGNLMQRFCQQCSRFHVLQEFDEGKRSCRRRLAGHNKRRRKTNPEPAANGSSSNEDQTSGYLLISLLRILSNMHSNQSDQTTYQDLLSHLLRSIAGQSTEHKEKDISEHLQNLQNGISVCNSELASTFLSNGALGPSMPSKQHATLPLSEIPSQGVFAQNSRSEDTKKFLQLRDYSECNECSAGKSKMNDFDLNDIYVDSDDGTEDIERSVLPVHLGASSLESPWAQQDSHQSSPPQTSGNSDSASAQSPSSSSGEAQSRTDRIVIKLFGKVPSDFPHDLRAQVLDWLQHSPTDMESYIRPGCVVLTIYLRQTEDAWDELCYDLSCGLSRLLQGSDDAFWSTGWVYVRIQHHLAFVLHGQVVVDTSLALRNNDYCNIVCVKPIAVSASEGVQFLVRGSNLKRPGTRLLCALEGKYLTEKVTQESTDSVDALMEHNEIQCISFSCSIPIVNGRGFIEVEDHGFSSSFFPFIVAEDDVCSDIRVLETELESSDICSDAMGAAVMETRVQAMDFIHEMGWLLHREQLKSRLSNLDPNPDLYPLNRFKWLMDFSIDHNWCAVVRKLLNILLDGNVDVGDHPSSNAALSEMGILHQAVRRNSKSLVELLLRYNPRKARCEENAVVDGGVEGFLFRPDVAGPGGLTPLHIAAGKDGSEDVLDALTDDPDMVGIEAWKSTRDSTGSTPEDYARLRGHFSYIHLVQRKINKRLTPGHVVLDIPTVLSESVTNVKQSDNLGTSFEIGTSQPRTSLRNCRYCDKKLTYGKLSRSLVYRPAMLSMVAIAAVCVCVALLFKSSPEVLYCFQPFRWESLDYGTS 982
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 1098280 1103461 - Bma008802.1 Bma13g00108 92837

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma13g00108 982 Gene3D - 720 888 IPR036770 -
Bma13g00108 982 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 1-RELATED 8 981 - -
Bma13g00108 982 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 8 981 IPR044817 GO:0003677
Bma13g00108 982 Gene3D - 130 200 IPR036893 GO:0003677|GO:0005634
Bma13g00108 982 SUPERFAMILY SBT domain 137 217 IPR036893 GO:0003677|GO:0005634
Bma13g00108 982 MobiDBLite consensus disorder prediction 393 430 - -
Bma13g00108 982 MobiDBLite consensus disorder prediction 203 227 - -
Bma13g00108 982 Pfam SBP domain 139 212 IPR004333 GO:0003677
Bma13g00108 982 ProSiteProfiles Zinc finger SBP-type profile. 136 213 IPR004333 GO:0003677
Bma13g00108 982 SUPERFAMILY Ankyrin repeat 722 867 IPR036770 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma13g00108 - - - qsu:112005479 1294.26
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma05g01233 Bma-Chr5:51742092 Bma13g00108 Bma-Chr13:1098280 1.34E-31 dispersed
Bma06g01524 Bma-Chr6:51642502 Bma13g00108 Bma-Chr13:1098280 4.04E-22 dispersed
Bma12g00958 Bma-Chr12:41513090 Bma13g00108 Bma-Chr13:1098280 2.17E-31 dispersed
Bma06g01452 Bma-Chr6:51211524 Bma13g00108 Bma-Chr13:1098280 0 transposed
Bma13g00158 Bma-Chr13:1799600 Bma13g00108 Bma-Chr13:1098280 0 transposed
Bma02g01384 Bma-Chr2:56151178 Bma13g00108 Bma-Chr13:1098280 5.57E-29 transposed
Bma10g00932 Bma-Chr10:19270616 Bma13g00108 Bma-Chr13:1098280 7.33E-130 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi7g464 . . . . Bpe03g00509 . Bma13g00108 . . . Cma01g00262 Cma14g00958 Car01g00236 Car14g00872 . . Cpe03g00825 . . . . . . . . . . . . . . Cone17ag0385 Cone20ag1033 . Cone11ag0721 . . Chy04g01191 . Blo07g00617 Blo10g00099 Bda05g00421 . . Bpe11g00121 . . . Cmo01g00273 Cmo14g00981 . . . . Cpe02g01546 . . . . . . . . Cla10g01123 Cam10g1498 Cec10g1187 Cco10g1169 Clacu10g1180 Cmu10g1953 Cre10g1335 . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bma13g00158 . 163 953 SBP-box Gene Family AT2G47070 59.6 8.8e-254 873.2
Bma13g00108 . 163 982 SBP-box Gene Family AT2G47070 58.2 5.7e-253 870.5
Bma10g00932 . 163 801 SBP-box Gene Family AT2G47070 50.6 2.3e-209 725.7
Bma13g00108 . 3 982 SBP-box Gene Family AT3G60030 55.3 1.0e-280 963.0
Bma13g00158 . 3 953 SBP-box Gene Family AT3G60030 55.5 7.4e-279 956.8
Bma13g00158 . 163 953 SBP-box Gene Family AT2G47070 59.6 8.8e-254 873.2
Bma13g00108 . 163 982 SBP-box Gene Family AT2G47070 58.2 5.7e-253 870.5
Bma10g00932 . 163 801 SBP-box Gene Family AT2G47070 50.6 2.3e-209 725.7
Bma13g00108 . 3 982 SBP-box Gene Family AT3G60030 55.3 1.0e-280 963.0
Bma13g00158 . 3 953 SBP-box Gene Family AT3G60030 55.5 7.4e-279 956.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003053 3 3 4 4 3 1 2 1 1 1 1 1 2 1 1 2 1 4 2 1 1 1 1 0 1 2 1 2 2 2 52
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
58195 PF03110 SBP 2.70E-29 No_clan Bma TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma13g00108 Bma_Chr13 FPKM 2.103761 4.006073 4.649769 4.286621 4.180744 2.421003 3.917692 5.716448 4.580764 5.385846