Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma13g00108 ATGAGTTCGGTAGAATTAAGAGCCCTTGGGAAGAGGAATTTAGATTGGGATTTGAATGACTGGAAGTGGGATGGAGATCTTTTCATTGCTAGCTCTTTGAATTCAGTGCCATCTGCTACCCTGAGTCGGCAAATATTTCCAATTGGAACAATTCCAGAGACTGGAGGCTCGTCAAACAGCTCCTCATCATGCTCGGATGATGCTAATATGAGAATTGAGAAAGGGAAGAAAGAAATCGAGAAAAGGAGGAGGATTACTGGGTTGGAAGACAGAGCCTTGCATGACGAAACTGGTGGGCTTATTTTAAAGCTCGGTTCTCATGGGTATCCACTTCCTGAGAGGGAATTAGGGAGTTGGGAGGGATGTAATGGAAAGAAGACGAAATTGGTCGGAGGAAGTTCAAATCGTGCAATTTGCCAGGTGGAGGACTGTGGAGCTGATCTGAGCAAGGCCAAAGATTATCACAGGCGACATAAAGTCTGTGAGATGCATTCTAAAGCCAGTAGGGCGCTGGTGGGGAACCTCATGCAGCGTTTCTGTCAACAATGTAGCAGGTTTCATGTTCTTCAAGAGTTTGACGAAGGAAAAAGAAGTTGTCGTAGGCGTTTGGCAGGTCATAACAAGCGAAGAAGAAAAACAAATCCCGAGCCAGCTGCTAATGGAAGCTCCTCAAATGAAGATCAAACCAGTGGCTATCTACTCATTAGCCTGTTGAGAATACTTTCCAACATGCATTCGAATCAATCCGACCAAACCACCTATCAGGATCTGCTATCACATCTTTTGAGGAGCATTGCCGGTCAAAGTACTGAGCACAAGGAGAAAGACATATCTGAACATTTGCAGAATCTGCAAAACGGGATATCAGTTTGTAATTCAGAACTAGCCTCTACTTTTCTTTCAAATGGTGCTCTGGGTCCTTCTATGCCATCAAAACAGCATGCCACTTTGCCATTGTCTGAGATACCATCACAAGGTGTGTTTGCTCAAAATTCCAGAAGTGAAGATACAAAAAAATTTCTTCAATTACGAGATTATTCTGAATGCAATGAGTGTTCTGCAGGGAAAAGCAAGATGAATGACTTTGATTTGAACGACATATACGTTGACTCTGATGATGGAACCGAAGATATAGAGAGATCTGTACTTCCTGTACATTTAGGGGCGAGTTCCCTAGAGTCTCCTTGGGCACAACAAGACTCTCATCAGTCAAGTCCACCTCAAACAAGTGGAAATTCAGATTCAGCATCTGCTCAGTCACCTTCTAGCTCTAGTGGAGAAGCTCAGAGCCGCACGGATCGTATTGTTATTAAACTATTTGGAAAAGTGCCCAGTGATTTTCCTCACGATCTACGAGCACAGGTTCTTGATTGGTTGCAACATAGTCCGACTGACATGGAGAGCTACATTAGACCTGGTTGTGTTGTTCTGACAATTTACCTACGTCAGACAGAAGATGCATGGGATGAACTATGCTATGACCTAAGTTGTGGCTTGAGTAGGCTTCTACAAGGCTCAGATGATGCTTTCTGGAGCACAGGATGGGTTTATGTTAGAATTCAGCATCATTTAGCATTTGTTTTACATGGTCAAGTTGTGGTAGATACGTCCTTAGCACTTCGAAATAACGATTATTGTAACATTGTCTGCGTAAAACCTATTGCCGTATCTGCATCAGAGGGGGTTCAGTTTTTAGTTAGAGGCTCGAATTTGAAGAGGCCTGGAACGAGGTTACTCTGTGCACTTGAAGGGAAGTATCTGACTGAAAAGGTTACTCAAGAATCAACTGATTCTGTTGATGCATTAATGGAGCATAATGAGATCCAATGCATTAGCTTTTCTTGCTCTATTCCCATAGTGAATGGAAGGGGCTTCATTGAGGTTGAAGATCATGGATTCAGCAGCAGCTTTTTTCCATTTATAGTCGCGGAGGATGATGTATGTTCAGACATTCGTGTTCTCGAGACTGAACTGGAGTCGTCGGATATATGCTCAGATGCCATGGGAGCTGCAGTAATGGAAACAAGGGTTCAAGCGATGGATTTTATTCATGAAATGGGATGGCTTCTTCATAGAGAACAACTGAAGTCTAGATTGAGCAATTTGGATCCAAATCCAGATCTTTACCCCTTGAATAGGTTTAAGTGGCTCATGGATTTCTCGATAGACCACAATTGGTGTGCTGTTGTGAGGAAATTATTAAACATTCTTCTTGATGGAAATGTGGATGTTGGAGATCACCCGTCGTCGAACGCTGCCTTATCTGAGATGGGTATTCTTCACCAGGCTGTAAGGAGAAACAGCAAGTCGCTTGTTGAGCTCCTTTTGAGATATAACCCCAGAAAAGCGAGATGCGAAGAAAATGCAGTGGTTGATGGAGGGGTTGAAGGCTTTTTGTTTAGGCCTGATGTTGCTGGACCTGGAGGCTTGACTCCACTTCACATTGCAGCCGGTAAAGACGGGTCTGAGGATGTCCTGGATGCATTAACCGACGATCCCGACATGGTCGGAATTGAAGCATGGAAGAGCACTCGAGACAGTACGGGGTCCACACCCGAAGATTATGCGCGCTTACGTGGCCATTTCTCGTACATCCATCTTGTCCAGAGGAAAATCAATAAGAGGCTTACGCCTGGCCATGTAGTTCTCGACATTCCTACTGTTCTCTCCGAATCTGTGACAAATGTTAAGCAATCCGACAATTTGGGCACTTCTTTCGAGATTGGAACGTCCCAGCCAAGAACCAGTCTTAGGAACTGTAGGTACTGTGATAAGAAACTCACTTATGGAAAATTGAGCAGGTCTCTCGTTTACAGGCCGGCAATGTTGTCGATGGTAGCCATCGCCGCCGTTTGTGTGTGTGTGGCACTTCTGTTCAAGAGCTCGCCGGAAGTTCTTTATTGTTTCCAGCCGTTCAGATGGGAATCGTTAGATTACGGAACAAGCTGA 2949 44.29 MSSVELRALGKRNLDWDLNDWKWDGDLFIASSLNSVPSATLSRQIFPIGTIPETGGSSNSSSSCSDDANMRIEKGKKEIEKRRRITGLEDRALHDETGGLILKLGSHGYPLPERELGSWEGCNGKKTKLVGGSSNRAICQVEDCGADLSKAKDYHRRHKVCEMHSKASRALVGNLMQRFCQQCSRFHVLQEFDEGKRSCRRRLAGHNKRRRKTNPEPAANGSSSNEDQTSGYLLISLLRILSNMHSNQSDQTTYQDLLSHLLRSIAGQSTEHKEKDISEHLQNLQNGISVCNSELASTFLSNGALGPSMPSKQHATLPLSEIPSQGVFAQNSRSEDTKKFLQLRDYSECNECSAGKSKMNDFDLNDIYVDSDDGTEDIERSVLPVHLGASSLESPWAQQDSHQSSPPQTSGNSDSASAQSPSSSSGEAQSRTDRIVIKLFGKVPSDFPHDLRAQVLDWLQHSPTDMESYIRPGCVVLTIYLRQTEDAWDELCYDLSCGLSRLLQGSDDAFWSTGWVYVRIQHHLAFVLHGQVVVDTSLALRNNDYCNIVCVKPIAVSASEGVQFLVRGSNLKRPGTRLLCALEGKYLTEKVTQESTDSVDALMEHNEIQCISFSCSIPIVNGRGFIEVEDHGFSSSFFPFIVAEDDVCSDIRVLETELESSDICSDAMGAAVMETRVQAMDFIHEMGWLLHREQLKSRLSNLDPNPDLYPLNRFKWLMDFSIDHNWCAVVRKLLNILLDGNVDVGDHPSSNAALSEMGILHQAVRRNSKSLVELLLRYNPRKARCEENAVVDGGVEGFLFRPDVAGPGGLTPLHIAAGKDGSEDVLDALTDDPDMVGIEAWKSTRDSTGSTPEDYARLRGHFSYIHLVQRKINKRLTPGHVVLDIPTVLSESVTNVKQSDNLGTSFEIGTSQPRTSLRNCRYCDKKLTYGKLSRSLVYRPAMLSMVAIAAVCVCVALLFKSSPEVLYCFQPFRWESLDYGTS 982
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 1098280 1103461 - Bma008802.1 Bma13g00108 92837
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma13g00108 982 Gene3D - 720 888 IPR036770 -
Bma13g00108 982 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 1-RELATED 8 981 - -
Bma13g00108 982 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 8 981 IPR044817 GO:0003677
Bma13g00108 982 Gene3D - 130 200 IPR036893 GO:0003677|GO:0005634
Bma13g00108 982 SUPERFAMILY SBT domain 137 217 IPR036893 GO:0003677|GO:0005634
Bma13g00108 982 MobiDBLite consensus disorder prediction 393 430 - -
Bma13g00108 982 MobiDBLite consensus disorder prediction 203 227 - -
Bma13g00108 982 Pfam SBP domain 139 212 IPR004333 GO:0003677
Bma13g00108 982 ProSiteProfiles Zinc finger SBP-type profile. 136 213 IPR004333 GO:0003677
Bma13g00108 982 SUPERFAMILY Ankyrin repeat 722 867 IPR036770 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma05g01233 Bma-Chr5:51742092 Bma13g00108 Bma-Chr13:1098280 1.34E-31 dispersed
Bma06g01524 Bma-Chr6:51642502 Bma13g00108 Bma-Chr13:1098280 4.04E-22 dispersed
Bma12g00958 Bma-Chr12:41513090 Bma13g00108 Bma-Chr13:1098280 2.17E-31 dispersed
Bma06g01452 Bma-Chr6:51211524 Bma13g00108 Bma-Chr13:1098280 0 transposed
Bma13g00158 Bma-Chr13:1799600 Bma13g00108 Bma-Chr13:1098280 0 transposed
Bma02g01384 Bma-Chr2:56151178 Bma13g00108 Bma-Chr13:1098280 5.57E-29 transposed
Bma10g00932 Bma-Chr10:19270616 Bma13g00108 Bma-Chr13:1098280 7.33E-130 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
58195 PF03110 SBP 2.70E-29 No_clan Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma13g00108 - - qsu:112005479 1294.26