Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma13g00112 TCGAACTCCGATTCGGTTCCCATGTCTCGCCAAGCGGCGTCGTCGGCTTTCCATAAGTCGAAGACTCTCGACAATAAATATATCCTTGGAGATGAGATCGGCAAGGGGGCATATGGCCGAGTTTACAAGGGTTTGGATTTGGAGAATGGGGACTTTGTTGCCATTAAGCAAGTTTCATTGGAGAATATTGCTCAGGAGGATCTCAATATTATTATGAATTTAAATCACAAAAACATTGTCAAATATCTTGGATCTTCAAAAACCAAGACTCATCTTCACATAATACTTGAGTATGTGGAGAATGGGTCCCTTGCCAACATAATAAAACCAAACAAGTTTGGTCCATTTCCAGAATCATTGGTTGCTGTTTTCATCAGTCAGGTTTTGGAAGGATTGGTTTATCTCCACGAACAGGGTGTTATTCATCGGGACATTAAAGGTGCAAACATACTGACAACCAAAGAGGGTCTTGTGAAACTAGCTGATTTTGGCGTTGCAACGAAGTTGAATGAGGCTGATGTTAATACACACTCAGTCGTTGGGACACCTTATTGGATGGCCCCAGAGGTGATTGAAATGTCGGGAGTTTGTGCTGCTTCTGACATTTGGAGTGTTGGATGCACTGTCATTGAACTTCTTACATGTGTTCCTCCTTATTATGATCTGCAGCCCATGCCAGCGCTTTTCCGGATTGTTCAGGACAAACACCCTCCAATCCCAGATAGCCTCTCTCTGGATATCACAGATTTTCTTCGCCAGTGCTTTAAGAAGGATGCTAGGCAAAGGCCAGATGCAAAATCATTACTTTCTCATACCTGGATTCAAAATTGTAAGCGCAATTTGCACAATTCTCTCCGTCACAGTGGGACATTGAGAAATATTCAGGAAGATGTTTCCGCTGACGCAGAAATTTCTAAACTAGATAATCAAAGCTCTTGCGAAAGACCTTTGACTAGCAAAGCTGAACTAGTTAATTCTGATATCAAAGCAGATGCCAACAAGGAGTTATTGTCAACGGTCTGTGTCATGAAAACATCTGATAAAGATCATGGCTCAGATTCTACCTTCCCTGAGGAAAGAATAGATTGCCAACTAGAAGATATCTCAGCGGATCAGGCTCCTATTTTAACCGTAAACAAAAAATCAACTCTGGTGACTAGTTCTGCTCAACCTTCTTCTAGTAAGGAAGTGGTTACGTCTGAATCAACTGAGCTTTATGAGCCGTTGCACAGTAATGATGAATCACTGATGAATGGTGATTTGGAATCTCCTGAATCCAAAAGAAAAAACACATCCAATAGACATGGAGGAAAAGGAACATCCCTGCATATTGCTGGTAGATCATTTGGTTTTGGGTCAAAAAGTCGAGAAAATAGTTCACAGAAGAATTCAAAGGCATCTGTTACCGTGGAAGAAAATGAACTGAGTAGGTTTAGTGACACTCCAGGAGATGCTTCCTTGGATGATTTATTCCATCCATTGGATAAGCAACCAGCGGATCAGATATTCGAAGCATCAACATCTAATTCTGCAAATCTGAATCAAATAAATGTGTCTGTAGCCGATGCTGGTAAAAATGATCTGGCCACAAAGTTGAGAGCTACAATTGCTCAAAAGCAAATGGAAACTGTAATGGGTCAAACACATGGTGGGAGTGACCTGTTGCGCTTGATGATGGGTGTTATAAAGGATGATATGATTGATATTGATGGCTTGGTGTTTGATGAAAAGTTGCCTGGAGAAAACCCTTTCCAGCTACAGGCTTTTGAGTTTAGCAGATTAGTTGGATTATTGAGACCTGAGGAACCTGAAGATGTGATTGAGTCTGTTTGTCGGAAGCTTATCACAATCTTTCGTCAACAATCTGAGCAGAAGCTTGTTTATGTTACCCAACATGGTTTGCTTCCTCTAATGGAATTGCTAGAGGTCCCTAAACCTCGAGTAATCTGTTTGGTGCTTCAACTTATAAACCAGATAGTTAAAGATAATATTGACTTTCAAGAAAATGCATGTCTTGTTGGTCTGATAATGTTTACAACGATAGTCAGCTTGTCATTATTCTCCACAACGGAAACAAAGATTAGCCTATCTTCGATGTTGTTATTCTGTCGAAGTTGTAGCCACTCGTTGATCTCCATTATCGATCTGATCACCTACAAGAACTTCAATTTTTTGAACTCCCCCATCATTTGGGAAATTGGGTTGAGCTTGAAAAAAATTAGGATTAAATTGAATTTTATCTCCAGTTCGGCGAGGAGGAACGATTTAGGCCTTCGACGAATAGGTTCTGTCCACGGCGCACACTCAGCAACTATCTGCCATGGTAGATTTTCTGTTCGGCGCGGTTCAGTCCCACTTCGTTGCCTGCGTTTGTCCACGATGGGTCGTCTCTTCTGCAAGGACCCAACCGCACGACAAGGGATGAATGTTTCTCCTCGTTTCGCCCTTGTCTGTGTTGAAAATCCTCTCCATACTCTTTTGAAAAATGACCGAACACGATCTAATACCAAATTGATGCATAGGGGACTGAACCTAGAAGAGGGGGTACATATTCCTTTGGTGATGGGTTTTGCTGTACCTGATCGTCCCCGAGAAGTTCGTATGGAAGCAGCAAATTTCTTGCTGCAACTTTGTCAATCAAGCTCTTTGACATTGCAAATGTTTATTGCTTGTCGTGGAATACCTGTGTTGGTGGGCTTTTTGGAAGCTGATTATGCAAAATACAGGGAGATGGTTCATTTAGCCATTGATGGCATGTGGCAGATTTTTAAGCTCCAGAGATCAACTCCTACTAATGATTTCTGTCGTATAGCAGCAAAAAATGGAATACTGCTCAGGCTTATTAACACCCTGTATAGTCTGAATGAGGCAACTCGTCTAGCATCGATATCTGTTGGGGGTGGATTGCCAGTTGATGGTTTAACCCAGCGGCCGCGATCTGGCCAACTTGATTCTAGTCATCCTATATTCAGTCAGACTGAGCCTTCAGCTTCTCCATCAGATCAGCCTGATCTTACTAAGGCTAGGCATGGAATAATCGATCTTCACATGTCTACTGGGATACAAGAAACTTCATTTGCTTCATCATCAAATTCTCAAAGATTAGACATCAATCAACCAGATCACCGACACGTTTCTGCAGACGCTGATAGATTTCAATCCAACGGTACAATTGAAGCTTCTTTTACATCTAAATTGCCAGAGCTGACATCTTTGGATAAAGATATAGGTTTACCATTCAAAGATCCATCTGCTAGTGCGTCTAAAGAACGAGAAAACTTAGATAGATGGAAAGTTGACCCTTCTCGAGTAGATGGTGAAATAAGACAGCAACGGACAGCCACTTCAGCGAATAGGACATCAATTGATAAGTCACCGAAAGTAATGGAATCTACATCAAATAGGTTCTCTGTTGCAGCTGCTGCTTCACAAGACCAAGTGCGCCCCCTTCTAAGTTTGTTAGACAAGGAGCCCCCTTCCCGACATTTTTCTGGTCAGCTTGAGTATGTGCGCCACCTCTCTGGATTGGAGAGACATGAAAGCATATTACCTCTGTTGCATGCATCTAATGAAACAAAGACAAATGGTGAACTTGATTTTCTAATGGCAGAATTTGCAGATGTTTCTCAGCGTGGAAAAGAAAATGGAAGCCTGGACTCTGTTGCTAGAATTTCCAACAAAACAGTAACGAAGAAGGTTGGACCATTATCTTCTAATGATGCAGCAGCATCTATCTCAGGGGTTGTGTCTCAAACTGCATCCGGTGTACTGTCTGGTTCAGGTGTTCTAAATGCTAGACCAGGGAGTGCAGCGTCCTCTGGGTTGCTTTCACACATGGTTTCGACTTTAAATGCCGATGTTGCTAGAGATTACCTGGCAAAAGTTGCAGATCTTCTGCTTGAATTTGCTCTGGCTGATACAACCGTGAAGTGTTACATGTGCAGCCAAAGTTTGCTTAGTCGTCTTCTCCAGATGTTCAATAGAGTAGAGCCCCCAATTCTATTAAAGATATTGATGTGTATAAACCATCTGTCAACTGATCCAAATTGCTTGGAGAACCTTCAGCGGGCTGATGCCATTAAATATTTGATCCCAAATCTTGAACTCAAAGAAGGATCTCTAGTGTCTCAAATACATCATGAGGTTCTCATTGCACTATTTAACTTGTGCAAAATAAATAAGAGAAGACAGGAACAGGCTGCCGAAAATGGAATTATTCCCCATTTGATGCATTTTATTATGTCAGATTCCCCACTGAAGATATATGCGTTGCCTCTGCTATGCGATATGGCTCATGCATCTCGTAATTCGAGAGAGCAGTTAAGAGCTCATGGAGGTTTGGATGTCTACTTGAGCCTTCTTGAGGATGAGCTTTGGTCAGTGACTGCCTTGGATTCTATTGCTGTTTGTTTGGCTCATGACAATGACAACCGAAAGGTTGAACAGGCTTTACTGAAAAAAGATGCAGTTCAGAAATTGGTGAAATTCTTTCAATGCTGTCCAGAACAGCATTTTGTGCACATATTGGAGCCCTTCTTAAAAATTATCACCAAATCATCACGCATTAATACAACGTTAGCTGTAAATGGTTTAACACCATTGCTCATTGCAAGGCTGGATCATCAGGATGCCATAGCTCGTCTGAATCTGCTTAAACTCATAAAGGCTGTTTACGAGCACCACCCACGGCCAAAGCAATTGATTGTGGAGAATGATTTGCCTCAGAAGCTGCAGAATTTAATAGAGGAACGAAGAGATGGACAACGTTCTGGTGGGCAGGTTTTGGTGAAACAAATGGCGACGTCCCTCCTTAAAGCACTTCATATAACACCGTTTCTGTAA 4842 41.86 SNSDSVPMSRQAASSAFHKSKTLDNKYILGDEIGKGAYGRVYKGLDLENGDFVAIKQVSLENIAQEDLNIIMNLNHKNIVKYLGSSKTKTHLHIILEYVENGSLANIIKPNKFGPFPESLVAVFISQVLEGLVYLHEQGVIHRDIKGANILTTKEGLVKLADFGVATKLNEADVNTHSVVGTPYWMAPEVIEMSGVCAASDIWSVGCTVIELLTCVPPYYDLQPMPALFRIVQDKHPPIPDSLSLDITDFLRQCFKKDARQRPDAKSLLSHTWIQNCKRNLHNSLRHSGTLRNIQEDVSADAEISKLDNQSSCERPLTSKAELVNSDIKADANKELLSTVCVMKTSDKDHGSDSTFPEERIDCQLEDISADQAPILTVNKKSTLVTSSAQPSSSKEVVTSESTELYEPLHSNDESLMNGDLESPESKRKNTSNRHGGKGTSLHIAGRSFGFGSKSRENSSQKNSKASVTVEENELSRFSDTPGDASLDDLFHPLDKQPADQIFEASTSNSANLNQINVSVADAGKNDLATKLRATIAQKQMETVMGQTHGGSDLLRLMMGVIKDDMIDIDGLVFDEKLPGENPFQLQAFEFSRLVGLLRPEEPEDVIESVCRKLITIFRQQSEQKLVYVTQHGLLPLMELLEVPKPRVICLVLQLINQIVKDNIDFQENACLVGLIMFTTIVSLSLFSTTETKISLSSMLLFCRSCSHSLISIIDLITYKNFNFLNSPIIWEIGLSLKKIRIKLNFISSSARRNDLGLRRIGSVHGAHSATICHGRFSVRRGSVPLRCLRLSTMGRLFCKDPTARQGMNVSPRFALVCVENPLHTLLKNDRTRSNTKLMHRGLNLEEGVHIPLVMGFAVPDRPREVRMEAANFLLQLCQSSSLTLQMFIACRGIPVLVGFLEADYAKYREMVHLAIDGMWQIFKLQRSTPTNDFCRIAAKNGILLRLINTLYSLNEATRLASISVGGGLPVDGLTQRPRSGQLDSSHPIFSQTEPSASPSDQPDLTKARHGIIDLHMSTGIQETSFASSSNSQRLDINQPDHRHVSADADRFQSNGTIEASFTSKLPELTSLDKDIGLPFKDPSASASKERENLDRWKVDPSRVDGEIRQQRTATSANRTSIDKSPKVMESTSNRFSVAAAASQDQVRPLLSLLDKEPPSRHFSGQLEYVRHLSGLERHESILPLLHASNETKTNGELDFLMAEFADVSQRGKENGSLDSVARISNKTVTKKVGPLSSNDAAASISGVVSQTASGVLSGSGVLNARPGSAASSGLLSHMVSTLNADVARDYLAKVADLLLEFALADTTVKCYMCSQSLLSRLLQMFNRVEPPILLKILMCINHLSTDPNCLENLQRADAIKYLIPNLELKEGSLVSQIHHEVLIALFNLCKINKRRQEQAAENGIIPHLMHFIMSDSPLKIYALPLLCDMAHASRNSREQLRAHGGLDVYLSLLEDELWSVTALDSIAVCLAHDNDNRKVEQALLKKDAVQKLVKFFQCCPEQHFVHILEPFLKIITKSSRINTTLAVNGLTPLLIARLDHQDAIARLNLLKLIKAVYEHHPRPKQLIVENDLPQKLQNLIEERRDGQRSGGQVLVKQMATSLLKALHITPFL 1613
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 1170563 1190667 + Bma008806.1 Bma13g00112 92841
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma13g00112 1613 MobiDBLite consensus disorder prediction 383 486 - -
Bma13g00112 1613 Gene3D Transferase(Phosphotransferase) domain 1 24 312 - -
Bma13g00112 1613 PRINTS Tyrosine kinase catalytic domain signature 96 109 IPR001245 GO:0004672|GO:0006468
Bma13g00112 1613 PRINTS Tyrosine kinase catalytic domain signature 134 152 IPR001245 GO:0004672|GO:0006468
Bma13g00112 1613 PRINTS Tyrosine kinase catalytic domain signature 243 265 IPR001245 GO:0004672|GO:0006468
Bma13g00112 1613 PRINTS Tyrosine kinase catalytic domain signature 200 222 IPR001245 GO:0004672|GO:0006468
Bma13g00112 1613 PANTHER MITOGEN-ACTIVATED KINASE KINASE KINASE 9 677 - -
Bma13g00112 1613 PANTHER MITOGEN-ACTIVATED KINASE KINASE KINASE 853 1569 - -
Bma13g00112 1613 CDD STKc_Cdc7_like 26 274 - -
Bma13g00112 1613 SUPERFAMILY Protein kinase-like (PK-like) 15 288 IPR011009 -
Bma13g00112 1613 MobiDBLite consensus disorder prediction 1110 1130 - -
Bma13g00112 1613 PANTHER MAP KINASE KINASE KINASE 9 677 - -
Bma13g00112 1613 PANTHER MAP KINASE KINASE KINASE 853 1569 - -
Bma13g00112 1613 MobiDBLite consensus disorder prediction 383 406 - -
Bma13g00112 1613 SUPERFAMILY ARM repeat 1274 1587 IPR016024 -
Bma13g00112 1613 ProSiteProfiles Protein kinase domain profile. 27 274 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bma13g00112 1613 MobiDBLite consensus disorder prediction 978 1003 - -
Bma13g00112 1613 Gene3D - 786 965 IPR011989 -
Bma13g00112 1613 SMART serkin_6 27 274 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bma13g00112 1613 ProSitePatterns Serine/Threonine protein kinases active-site signature. 140 152 IPR008271 GO:0004672|GO:0006468
Bma13g00112 1613 Pfam Protein kinase domain 29 274 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bma13g00112 1613 MobiDBLite consensus disorder prediction 452 480 - -
Bma13g00112 1613 ProSitePatterns Protein kinases ATP-binding region signature. 33 56 IPR017441 GO:0005524
Bma13g00112 1613 SUPERFAMILY ARM repeat 591 962 IPR016024 -
Bma13g00112 1613 Gene3D - 1256 1607 IPR011989 -
Bma13g00112 1613 MobiDBLite consensus disorder prediction 974 1006 - -
Bma13g00112 1613 SMART arm_5 1306 1346 IPR000225 GO:0005515
Bma13g00112 1613 SMART arm_5 1393 1432 IPR000225 GO:0005515
Bma13g00112 1613 SMART arm_5 1347 1391 IPR000225 GO:0005515
Bma13g00112 1613 SMART arm_5 881 924 IPR000225 GO:0005515
Bma13g00112 1613 SMART arm_5 621 661 IPR000225 GO:0005515
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma12g00255 Bma-Chr12:3305310 Bma13g00112 Bma-Chr13:1170563 8.21E-37 dispersed
Bma13g00112 Bma-Chr13:1170563 Bma09g00311 Bma-Chr9:26141328 1.14E-53 dispersed
Bma13g00112 Bma-Chr13:1170563 Bma01g00841 Bma-Chr1:7951419 9.80E-59 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
66837 PF00069 Pkinase 5.70E-66 CL0016 Bma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma13g00112 - - mnt:21398086 1219.91