Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma13g00133 ATGTGTGGTGGTCCTGGAACACTAAAATCCGCGTCTACTCATACCTTGTCTTCTGTGCAAATTACTACAACTAACCCACAAGACATGAGTTGCCAGACGGCTGAATGCGAATCGTCTTTTTACAACTTATTGGAATTTGCTTCTGATAATGATGTTGAAGGTTTTAAACGTCTGATAGATTATGATGCTTCTTTCATTAATAAGTCTGGACTATGGTATGTCCGTCGAAATGGATCAAAACAGGTTGTTCAGGAGGATAGAACTCCACTAATGGTTGCTGCTACCTATGGTAGTGTAAATGTCTTGAAGCTTTTACTGTCATATCCTGAGATTGATGTAAATCTCTCATCTGGCCTGGATAGAAGCACGGCTCTTCATTGTGCTGCTTCTAGTGGATCTGTCAACATTGTTGAAGTTGTTCATATACTTTTATCTGCGGGTGCAGATCCTAATTCTGTTGATGCTAAGGGCGATCGCCCTGTTGATGTCATTTATGTGCATCCAAAGCTGCATAACATGAAGACCAAGCTTGAGGAAATATTAAGAAGCAATCATTGTCAACCAGATGAGGTGACCTTACAATTATCCATCAAGACCTCATGTTCTGTGTCATCATCTCTTTCTTCATCACCAGAAAATGGGTTTTTATCTTCAGAGTTAGCATCTCTTGTTGTGAAAAGTGCTGACGAATCTGTTAATACTACAACGGAAAAGAAAGAATATCCAATCGATCCTTCTCTTCCCGACATTAAGAATAGCATTTATGCAACTGATGAGTTCCGAATGTTTTCTTTTAAGGTGAGGCCTTGTTCGCGAGCATATTCACATGATTGGACTGAATGTCCATTTGTCCATCCTGGGGAAAATGCTCGTAGGAGGGATCCAAGAAAGTTTCATTACAGTTGTGTACCATGTCCAGATTTTCGCAAGGGTGCTTGTAGGCGCGGGGATATGTGTGAATATGCACATGGGGTGTTTGAGTGCTGGCTCCATCCTGCTCAGTATCGAACACGACTATGCAAGGATGGCATTAGTTGTGATAGACGGGTTTGTTTTTTTGCTCATGCAACTGAGGAACTCAGGCCCTTGTATGTCTCTACTGGTTCTGCCGTTCCTTCCCCACGATCGACAACATCAGCACCAAATGTTATGGACATGGCTGCTGCATTAAGTCTCTTTCCTGGCTCTCCGTCATCATTGTCAGCCATGTCTCCTTCTCCATTCTCTCAGCCCATGTGTCCTTCTCCATTTTCTCAGCCCATGTCTCCAGCCTCAAATGGCTTATTACACTCTGCAGCTTGGCCCCAGCCTAATGTACCCACCCTTCATCTCCCTGGAAGCACCCTACAATCCAGTCGCCTGAGGACATCTCTTAGTGCTCGGGATATGCCATTGGAGGATTTAAATATGTTGCTTAATTTTGATTCCCAGAAACAGCTTTTGAATGACATGAATTGTTTCTCTCAGCTCCGGCCTGGCTCTGTCTGTCATGGTGATTTTGGTCGGTCTAAAACTCTAATGCCTTCCAATCTGGAAGAGATTTTTGCCACTGAGATATCTTCATCCCCTCGGTTTTCTGATTCTGGAGCAGCTGCTGTTTTTTCTCCGACTCACAAATCTGTTCTTTCGCAATTCCAACAAAAACAGAGTATTCCATCACCCATTAATACTAGTGTTTGTTCTCCTAAATCTGTTGAGCACCAATTGCTGCAGGCCTCTTTAAGAGCCTTGTCTCCTGGAAGGATTTCACCAAGAAATGCTGATATGATATCCCCTATGGGCACTAGACATCCTCCATTTCTTCATCGTGAGAAACATCAAAATCTTCTCAGCGTGAGCCCTAGGGACCTTGGATCCAACATTTTGGCCTCAAATGGAACACCGGTAAGTTCTTGGTCGAAATGGGGTTCTCCCATTGGAAAAGCGGATTGGTCAGTTCATGGAGATGAACTGGCCCGTTTGAGAGGATCATCTTTAGCTGAGCTTGGGAATGGAATTGAGGAGCCTGACTTGTCATGGGTCCAGACTCTTGTTAAAGAATCTCCACCAGAAGTTATGAGAGACAAGCTGACAGTTCCAGCCACTGGCAGTACAGCGCCATGCCCTGTGAGGCTTTGA 2118 44.05 MCGGPGTLKSASTHTLSSVQITTTNPQDMSCQTAECESSFYNLLEFASDNDVEGFKRLIDYDASFINKSGLWYVRRNGSKQVVQEDRTPLMVAATYGSVNVLKLLLSYPEIDVNLSSGLDRSTALHCAASSGSVNIVEVVHILLSAGADPNSVDAKGDRPVDVIYVHPKLHNMKTKLEEILRSNHCQPDEVTLQLSIKTSCSVSSSLSSSPENGFLSSELASLVVKSADESVNTTTEKKEYPIDPSLPDIKNSIYATDEFRMFSFKVRPCSRAYSHDWTECPFVHPGENARRRDPRKFHYSCVPCPDFRKGACRRGDMCEYAHGVFECWLHPAQYRTRLCKDGISCDRRVCFFAHATEELRPLYVSTGSAVPSPRSTTSAPNVMDMAAALSLFPGSPSSLSAMSPSPFSQPMCPSPFSQPMSPASNGLLHSAAWPQPNVPTLHLPGSTLQSSRLRTSLSARDMPLEDLNMLLNFDSQKQLLNDMNCFSQLRPGSVCHGDFGRSKTLMPSNLEEIFATEISSSPRFSDSGAAAVFSPTHKSVLSQFQQKQSIPSPINTSVCSPKSVEHQLLQASLRALSPGRISPRNADMISPMGTRHPPFLHREKHQNLLSVSPRDLGSNILASNGTPVSSWSKWGSPIGKADWSVHGDELARLRGSSLAELGNGIEEPDLSWVQTLVKESPPEVMRDKLTVPATGSTAPCPVRL 705
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 1338580 1340697 + Bma008825.1 Bma13g00133 92862
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma13g00133 705 Gene3D - 300 362 - -
Bma13g00133 705 Gene3D - 38 185 IPR036770 -
Bma13g00133 705 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 304 324 IPR000571 GO:0046872
Bma13g00133 705 ProSiteProfiles Ankyrin repeat region circular profile. 120 154 - -
Bma13g00133 705 SMART ANK_2a 85 115 IPR002110 GO:0005515
Bma13g00133 705 SMART ANK_2a 120 152 IPR002110 GO:0005515
Bma13g00133 705 ProSiteProfiles Ankyrin repeat profile. 120 155 IPR002110 GO:0005515
Bma13g00133 705 PANTHER UNKEMPT FAMILY MEMBER 24 692 IPR045234 -
Bma13g00133 705 PRINTS Ankyrin repeat signature 121 136 IPR002110 GO:0005515
Bma13g00133 705 PRINTS Ankyrin repeat signature 139 153 IPR002110 GO:0005515
Bma13g00133 705 SUPERFAMILY Ankyrin repeat 42 167 IPR036770 -
Bma13g00133 705 SMART c3hfinal6 334 357 IPR000571 GO:0046872
Bma13g00133 705 SMART c3hfinal6 299 325 IPR000571 GO:0046872
Bma13g00133 705 ProSiteProfiles Ankyrin repeat profile. 85 107 IPR002110 GO:0005515
Bma13g00133 705 ProSiteProfiles Zinc finger C3H1-type profile. 304 326 IPR000571 GO:0046872
Bma13g00133 705 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 56 24 692 - -
Bma13g00133 705 Pfam Ankyrin repeats (3 copies) 52 154 IPR002110 GO:0005515
Bma13g00133 705 ProSiteProfiles Ankyrin repeat region circular profile. 85 107 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g02725 Bma-Chr1:84626372 Bma13g00133 Bma-Chr13:1338580 0 dispersed
Bma03g00176 Bma-Chr3:1352233 Bma13g00133 Bma-Chr13:1338580 1.32E-141 dispersed
Bma03g00245 Bma-Chr3:1885483 Bma13g00133 Bma-Chr13:1338580 1.58E-140 dispersed
Bma04g01517 Bma-Chr4:51197814 Bma13g00133 Bma-Chr13:1338580 5.49E-24 dispersed
Bma07g00064 Bma-Chr7:1482967 Bma13g00133 Bma-Chr13:1338580 1.02E-10 dispersed
Bma08g01081 Bma-Chr8:49860477 Bma13g00133 Bma-Chr13:1338580 2.54E-140 dispersed
Bma10g00204 Bma-Chr10:1811749 Bma13g00133 Bma-Chr13:1338580 3.98E-18 dispersed
Bma10g01131 Bma-Chr10:37387197 Bma13g00133 Bma-Chr13:1338580 0 dispersed
Bma10g00909 Bma-Chr10:17659737 Bma13g00133 Bma-Chr13:1338580 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
58197 PF12796 Ank_2 4.40E-11 CL0465 Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma13g00133 - - zju:107417606 884.404