Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma13g00150 ATGGGTAATTTAGAAATCCTTCTAGTGGTCTCATTTTCCCTTTTAGTTTGTTCTGTTAATGGGTATTATGGGGGTTGGATCAACGCCCATGCCACTTTCTATGGTGGAAGCGATGCATCTGGAACAATGGGTGGAGCTTGTGGATATGGGAACCTTTACAGCCAAGGTTATGGGACGAACACTGTAGCTCTAAGCACTGCTTTGTTTAACAATGGACTGAGTTGTGGAGCTTGTTATGAACTAAGATGTGTAGATGACCCGCAATGGTGTCTTCCTGGATCAATTACAGTCACTGCAACTAATTTCTGCCCTCCCGGAGGTTGGTGTGATCCTCCTCGTGAACACTTTGATCTCTCCCAACCTGTATTTCAACACATTGCTCAATACAGAGCTGGAATTGTGCCTGTTGCTTACAGAAGGGTAAGTTGCAGAAGAGGTGGAGGGATCAGATTCACGATCAACGGCCATTCTTTCTTCAATCTAGTGCTGGTAACCAACGTCGGTGGAGCTGGAGACGTTCATTCTGTGTCCATCAAAGGGTCTAAAGGTGGGTGGCATCCCATGTCAAGAAATTGGGGCCAGAATTGGCAGAGCAATTCCTACTTAAACGGGCAAAGTCTGTCTTTTGCAGTCACAACAAGTGACGGTCGGACTGTGGTTTCTTACAACGTGGCTCCTTCAGGTTGGTCCTTCGGACAAACCTACTCTGGGTCACAGTTCTGA 723 46.61 MGNLEILLVVSFSLLVCSVNGYYGGWINAHATFYGGSDASGTMGGACGYGNLYSQGYGTNTVALSTALFNNGLSCGACYELRCVDDPQWCLPGSITVTATNFCPPGGWCDPPREHFDLSQPVFQHIAQYRAGIVPVAYRRVSCRRGGGIRFTINGHSFFNLVLVTNVGGAGDVHSVSIKGSKGGWHPMSRNWGQNWQSNSYLNGQSLSFAVTTSDGRTVVSYNVAPSGWSFGQTYSGSQF 240
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 1581215 1582167 - Bma008841.1 Bma13g00150 92879
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma13g00150 240 Gene3D - 146 240 IPR036749 -
Bma13g00150 240 PRINTS Expansin/Lol pI family signature 223 237 IPR007118 GO:0005576
Bma13g00150 240 PRINTS Expansin/Lol pI family signature 25 40 IPR007118 GO:0005576
Bma13g00150 240 PRINTS Expansin/Lol pI family signature 43 61 IPR007118 GO:0005576
Bma13g00150 240 PRINTS Expansin/Lol pI family signature 185 199 IPR007118 GO:0005576
Bma13g00150 240 PRINTS Expansin/Lol pI family signature 65 83 IPR007118 GO:0005576
Bma13g00150 240 PRINTS Expansin/Lol pI family signature 131 147 IPR007118 GO:0005576
Bma13g00150 240 SUPERFAMILY Barwin-like endoglucanases 10 166 IPR036908 -
Bma13g00150 240 PANTHER EXPANSIN-A5 8 240 - -
Bma13g00150 240 SMART dpbb_1 61 138 IPR007112 -
Bma13g00150 240 Pfam Lytic transglycolase 61 138 IPR009009 -
Bma13g00150 240 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 44 148 IPR007112 -
Bma13g00150 240 PANTHER EXPANSIN-A15 8 240 IPR002963 GO:0009664
Bma13g00150 240 SUPERFAMILY PHL pollen allergen 146 236 IPR036749 -
Bma13g00150 240 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 158 237 IPR007117 -
Bma13g00150 240 Pfam Expansin C-terminal domain 149 226 IPR007117 -
Bma13g00150 240 PRINTS Expansin signature 56 70 IPR002963 GO:0009664
Bma13g00150 240 PRINTS Expansin signature 123 136 IPR002963 GO:0009664
Bma13g00150 240 PRINTS Expansin signature 83 94 IPR002963 GO:0009664
Bma13g00150 240 PRINTS Expansin signature 106 123 IPR002963 GO:0009664
Bma13g00150 240 PRINTS Expansin signature 147 159 IPR002963 GO:0009664
Bma13g00150 240 PRINTS Expansin signature 159 180 IPR002963 GO:0009664
Bma13g00150 240 PRINTS Expansin signature 223 239 IPR002963 GO:0009664
Bma13g00150 240 PRINTS Expansin signature 194 215 IPR002963 GO:0009664
Bma13g00150 240 PRINTS Expansin signature 95 105 IPR002963 GO:0009664
Bma13g00150 240 Gene3D - 15 144 IPR036908 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bma13g00150 Bma14g01458 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma06g00694 Bma-Chr6:36989179 Bma13g00150 Bma-Chr13:1581215 1.39E-142 dispersed
Bma13g00150 Bma-Chr13:1581215 Bma15g00149 Bma-Chr15:1543263 5.06E-140 dispersed
Bma13g00150 Bma-Chr13:1581215 Bma14g01458 Bma-Chr14:28081838 1.12E-149 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma13g00150 - K20628 vvi:100244103 447.203