Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma13g00158 ATGAGTTCGGTAGAATTAAGAGCCCTTGGGAAGAGGAATTTAGATTGGGATTTGAATGACTGGAAGTGGGATGGAGATCTTTTCATTGCTAGCTCTTTGAATTCAGTGCCATCTGCTACCCTGAGTCGGCAAATATTTCCAATTGGAACAATTCCAGAGACTGGAGGCTCGTCAAACAGCTCCTCATCATGCTCGGATGATGCTAATATGAGAATTGAGAAAGGGAAGAAAGAAATCGAGAAAAGGAGGAGGATTACCGGGTTGGAAGACAGAGCCTTGCATGACGAAACTGGTGGGCTTATTTTAAAGCTCGGTTCTCATGGGTATCCACTTCCTGAGAGGGAATTAGGGAGTTGGGAGGGATGTAATGGAAAGAAGACAAAATTGGTCGGAGGAAGTTCAAATCGTGCAATTTGCCAGGTGGAGGACTGTGGAGCTGATCTGAGCAAGGCCAAAGATTATCACAGGCGACATAAAGTCTGTGAGATGCATTCTAAAGCCAGTAGGGCGCTGGTGGGGAACCTCATGCAGCGTTTCTGTCAACAATGTAGCAGGTTTCATGTTCTTCAAGAGTTTGACGAAGGAAAAAGAAGTTGTCGTAGGCGTTTGGCAGGTCATAACAAGCGAAGAAGAAAAACAAATCCCGAGCCAGCTGCTAATGGAAGCTCCTCAAATGAAGATCAAACCAGTGGCTATCTACTCATTAGCCTGTTGAGAATACTTTCCAACATGCATTCGAATCAATCCGACCAAACCACCTATCAGGATCTGCTATCACATCTTTTGAGGAGCATTGCCGGTCAAAGTACTGAGCACAAGGAGAAAGACATATCTGAACATTTGCAGAATCTGCAAAACGGGATATCAGTTTGTAATTCAGAACTAGCCTCTACTTTTCTTTCAAATGGTGCTCTGGGTCCTTCTATGCCATCAAAACAGCATGCCACTTTGCCATTGTCTGAGATACCATCACAAGGGAAAAGCAAGATGAATGACTTTGATTTGAACGACATATACGTTGACTCTGATGATGGAACCGAAGATATAGAGAGATCTGTACTTCCTGTACATTTAGGGGCGAGTTCCCTAGAGTCTCCTTGGGCACAACAAGACTCTCATCAGTCAAGTCCACCTCAAACAAGTGGAAATTCAGATTCAGCATCTGCTCAGTCACCTTCTAGCTCTAGTGGAGAAGCTCAGAGCCGCACAGATCGTATTGTTATTAAACTATTTGGAAAAGTGCCCAGTGATTTTCCTCACGATCTACGAGCACAGGTTCTTGATTGGTTGCAACATAGTCCGACTGACATGGAGAGCTACATTAGACCTGGTTGCATTGTTCTGACAATTTACCTACGTCAGACAGAAGATGCATGGGATGAACTTTGCTATGACCTAAGTTGTGGCTTGAGTAGGCTTCTACAAGGCTCAGATGATGCTTTCTGGAGCACAGGATGGGTTTATGTTAGAATTCAGCATCATTTAGCATTTGTTTTACATGGTCAAGTTGTGGTAGATACGTCCTTAGCACTTCGAAATAACGATTATTGTAACATTGTCTGCGTAAAACCTATTGCCGTATCTGCATCAGAGAGGGTTCAGTTTTTAGTTAGAGGCTCGAATTTGAAGAGGCCTGGAACGAGTTTACTCTGTGCACTTGAAGGGAAGTATCTGACTGAGAAGGTTACTCAAGAATCAACTGATTCTGTTGATGCATTAATGGAGCATAATGAGATCCAATGCATTAGCTTATCTTGCTCTATTCCTATAGTGAATGGAAGGGGCTTCATTGAGGTTGAAGATCATGGACTCAGCAGCAGCTTTTTTCCATTTATAGTCGCGGAGGATGATGTATGTTCAGACATTCGTGTTCTCGAGACTGAACTGGAGTCGTCGGATATATGCTCAGATGCCATGGGAGCTGCAGTAATGGAAACAAGGGTTCAAGCGATGGATTTTATTCATGAAATGGGATGGCTTCTTCATAGAGAACAACTGAAGTCTAGATTGAGCAATTTGGATCCAAATCCAGATCTTTACCCCTTGAATAGGTTTAAGTGGCTCATGGATTTCTCGATAGACCACAATTGGTGTGCTGTTGTGAGGAAATTATTAAACATTCTTCTTGATGGAAATGTGAATGTTGGAGATCACCCTTCGTCGAACGCTGCCTTATCTGAGATGGGTATTCTTCACCAGGCTGTAAGGAGAAACGGTAAGGCGCTTGTTGAGCTCCTCTTGAGATATAACCCCAAAAAAGCGAGATGCGAAGAAAATGCAGTGGTTGATGGAGGGGTTGAAGGCTTTTTGTTTAGGCCTGATGTTGCTGGACCTGGAGGCTTGACTCCACTTCACATTGCAGCCGGTAAAGACGGGTCTGAGGATGTCCTGGATGCATTAACCGACGATCCCGACATGGTCGGAATTGAAGCATGGAAGAGCACTCGAGACAGTACGGGGTCCACACCCGAAGATTATGCGCGCTTACGTGGCCATTTCTCATACATCCATCTTGTCCAGAGGAAAATCAATAAGAGGCTTACGCCTGGCCATGTAGTTCTCGACATTCCTACAGTTCTCTCCGAATCTGTGACAAATGTTAAGCAATCCGACAATTTGGGCACTTCTTTCGAGATTGGAACGTCCCAGCCAAGAACCAGTCTTAGGAACTGTAGGTACTGTGATAAGAAACTCACTTATGGAAAATTGAGCAGGTCTCTCGTTTACAGGCCGGCAATGTTGTCGATGGTAGCCATCGCCGCCGTTTGTGTGTGTGTGGCACTTCTGTTCAAGAGCTCGCCGGAAGTTCTTTATTGTTTCCAGCCGTTCAGATGGGAATCGTTAGATTACGGAACAAGCTGA 2862 44.48 MSSVELRALGKRNLDWDLNDWKWDGDLFIASSLNSVPSATLSRQIFPIGTIPETGGSSNSSSSCSDDANMRIEKGKKEIEKRRRITGLEDRALHDETGGLILKLGSHGYPLPERELGSWEGCNGKKTKLVGGSSNRAICQVEDCGADLSKAKDYHRRHKVCEMHSKASRALVGNLMQRFCQQCSRFHVLQEFDEGKRSCRRRLAGHNKRRRKTNPEPAANGSSSNEDQTSGYLLISLLRILSNMHSNQSDQTTYQDLLSHLLRSIAGQSTEHKEKDISEHLQNLQNGISVCNSELASTFLSNGALGPSMPSKQHATLPLSEIPSQGKSKMNDFDLNDIYVDSDDGTEDIERSVLPVHLGASSLESPWAQQDSHQSSPPQTSGNSDSASAQSPSSSSGEAQSRTDRIVIKLFGKVPSDFPHDLRAQVLDWLQHSPTDMESYIRPGCIVLTIYLRQTEDAWDELCYDLSCGLSRLLQGSDDAFWSTGWVYVRIQHHLAFVLHGQVVVDTSLALRNNDYCNIVCVKPIAVSASERVQFLVRGSNLKRPGTSLLCALEGKYLTEKVTQESTDSVDALMEHNEIQCISLSCSIPIVNGRGFIEVEDHGLSSSFFPFIVAEDDVCSDIRVLETELESSDICSDAMGAAVMETRVQAMDFIHEMGWLLHREQLKSRLSNLDPNPDLYPLNRFKWLMDFSIDHNWCAVVRKLLNILLDGNVNVGDHPSSNAALSEMGILHQAVRRNGKALVELLLRYNPKKARCEENAVVDGGVEGFLFRPDVAGPGGLTPLHIAAGKDGSEDVLDALTDDPDMVGIEAWKSTRDSTGSTPEDYARLRGHFSYIHLVQRKINKRLTPGHVVLDIPTVLSESVTNVKQSDNLGTSFEIGTSQPRTSLRNCRYCDKKLTYGKLSRSLVYRPAMLSMVAIAAVCVCVALLFKSSPEVLYCFQPFRWESLDYGTS 953
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 1799600 1804791 - Bma008850.1 Bma13g00158 92887

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma13g00158 953 MobiDBLite consensus disorder prediction 363 401 - -
Bma13g00158 953 Pfam SBP domain 139 212 IPR004333 GO:0003677
Bma13g00158 953 Gene3D - 130 200 IPR036893 GO:0003677|GO:0005634
Bma13g00158 953 Gene3D - 672 848 IPR036770 -
Bma13g00158 953 SUPERFAMILY SBT domain 137 217 IPR036893 GO:0003677|GO:0005634
Bma13g00158 953 MobiDBLite consensus disorder prediction 203 227 - -
Bma13g00158 953 ProSiteProfiles Zinc finger SBP-type profile. 136 213 IPR004333 GO:0003677
Bma13g00158 953 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 8 306 IPR044817 GO:0003677
Bma13g00158 953 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 320 952 IPR044817 GO:0003677
Bma13g00158 953 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 1-RELATED 8 306 - -
Bma13g00158 953 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 1-RELATED 320 952 - -
Bma13g00158 953 SUPERFAMILY Ankyrin repeat 691 838 IPR036770 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma13g00158 - - - pvy:116138190 1275.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma06g01452 Bma-Chr6:51211524 Bma13g00158 Bma-Chr13:1799600 0 dispersed
Bma07g00383 Bma-Chr7:4729577 Bma13g00158 Bma-Chr13:1799600 1.44E-33 dispersed
Bma10g00932 Bma-Chr10:19270616 Bma13g00158 Bma-Chr13:1799600 3.51E-130 dispersed
Bma13g00158 Bma-Chr13:1799600 Bma13g00108 Bma-Chr13:1098280 0 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bma13g00158 . 163 953 SBP-box Gene Family AT2G47070 59.6 8.8e-254 873.2
Bma13g00108 . 163 982 SBP-box Gene Family AT2G47070 58.2 5.7e-253 870.5
Bma10g00932 . 163 801 SBP-box Gene Family AT2G47070 50.6 2.3e-209 725.7
Bma13g00108 . 3 982 SBP-box Gene Family AT3G60030 55.3 1.0e-280 963.0
Bma13g00158 . 3 953 SBP-box Gene Family AT3G60030 55.5 7.4e-279 956.8
Bma13g00158 . 163 953 SBP-box Gene Family AT2G47070 59.6 8.8e-254 873.2
Bma13g00108 . 163 982 SBP-box Gene Family AT2G47070 58.2 5.7e-253 870.5
Bma10g00932 . 163 801 SBP-box Gene Family AT2G47070 50.6 2.3e-209 725.7
Bma13g00108 . 3 982 SBP-box Gene Family AT3G60030 55.3 1.0e-280 963.0
Bma13g00158 . 3 953 SBP-box Gene Family AT3G60030 55.5 7.4e-279 956.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003053 3 3 4 4 3 1 2 1 1 1 1 1 2 1 1 2 1 4 2 1 1 1 1 0 1 2 1 2 2 2 52
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
58201 PF03110 SBP 2.60E-29 No_clan Bma TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma13g00158 Bma_Chr13 FPKM 7.053609 7.64881 28.008446 26.507412 11.636983 12.983225 10.899147 43.362606 42.748924 40.716656