Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma13g00158 ATGAGTTCGGTAGAATTAAGAGCCCTTGGGAAGAGGAATTTAGATTGGGATTTGAATGACTGGAAGTGGGATGGAGATCTTTTCATTGCTAGCTCTTTGAATTCAGTGCCATCTGCTACCCTGAGTCGGCAAATATTTCCAATTGGAACAATTCCAGAGACTGGAGGCTCGTCAAACAGCTCCTCATCATGCTCGGATGATGCTAATATGAGAATTGAGAAAGGGAAGAAAGAAATCGAGAAAAGGAGGAGGATTACCGGGTTGGAAGACAGAGCCTTGCATGACGAAACTGGTGGGCTTATTTTAAAGCTCGGTTCTCATGGGTATCCACTTCCTGAGAGGGAATTAGGGAGTTGGGAGGGATGTAATGGAAAGAAGACAAAATTGGTCGGAGGAAGTTCAAATCGTGCAATTTGCCAGGTGGAGGACTGTGGAGCTGATCTGAGCAAGGCCAAAGATTATCACAGGCGACATAAAGTCTGTGAGATGCATTCTAAAGCCAGTAGGGCGCTGGTGGGGAACCTCATGCAGCGTTTCTGTCAACAATGTAGCAGGTTTCATGTTCTTCAAGAGTTTGACGAAGGAAAAAGAAGTTGTCGTAGGCGTTTGGCAGGTCATAACAAGCGAAGAAGAAAAACAAATCCCGAGCCAGCTGCTAATGGAAGCTCCTCAAATGAAGATCAAACCAGTGGCTATCTACTCATTAGCCTGTTGAGAATACTTTCCAACATGCATTCGAATCAATCCGACCAAACCACCTATCAGGATCTGCTATCACATCTTTTGAGGAGCATTGCCGGTCAAAGTACTGAGCACAAGGAGAAAGACATATCTGAACATTTGCAGAATCTGCAAAACGGGATATCAGTTTGTAATTCAGAACTAGCCTCTACTTTTCTTTCAAATGGTGCTCTGGGTCCTTCTATGCCATCAAAACAGCATGCCACTTTGCCATTGTCTGAGATACCATCACAAGGGAAAAGCAAGATGAATGACTTTGATTTGAACGACATATACGTTGACTCTGATGATGGAACCGAAGATATAGAGAGATCTGTACTTCCTGTACATTTAGGGGCGAGTTCCCTAGAGTCTCCTTGGGCACAACAAGACTCTCATCAGTCAAGTCCACCTCAAACAAGTGGAAATTCAGATTCAGCATCTGCTCAGTCACCTTCTAGCTCTAGTGGAGAAGCTCAGAGCCGCACAGATCGTATTGTTATTAAACTATTTGGAAAAGTGCCCAGTGATTTTCCTCACGATCTACGAGCACAGGTTCTTGATTGGTTGCAACATAGTCCGACTGACATGGAGAGCTACATTAGACCTGGTTGCATTGTTCTGACAATTTACCTACGTCAGACAGAAGATGCATGGGATGAACTTTGCTATGACCTAAGTTGTGGCTTGAGTAGGCTTCTACAAGGCTCAGATGATGCTTTCTGGAGCACAGGATGGGTTTATGTTAGAATTCAGCATCATTTAGCATTTGTTTTACATGGTCAAGTTGTGGTAGATACGTCCTTAGCACTTCGAAATAACGATTATTGTAACATTGTCTGCGTAAAACCTATTGCCGTATCTGCATCAGAGAGGGTTCAGTTTTTAGTTAGAGGCTCGAATTTGAAGAGGCCTGGAACGAGTTTACTCTGTGCACTTGAAGGGAAGTATCTGACTGAGAAGGTTACTCAAGAATCAACTGATTCTGTTGATGCATTAATGGAGCATAATGAGATCCAATGCATTAGCTTATCTTGCTCTATTCCTATAGTGAATGGAAGGGGCTTCATTGAGGTTGAAGATCATGGACTCAGCAGCAGCTTTTTTCCATTTATAGTCGCGGAGGATGATGTATGTTCAGACATTCGTGTTCTCGAGACTGAACTGGAGTCGTCGGATATATGCTCAGATGCCATGGGAGCTGCAGTAATGGAAACAAGGGTTCAAGCGATGGATTTTATTCATGAAATGGGATGGCTTCTTCATAGAGAACAACTGAAGTCTAGATTGAGCAATTTGGATCCAAATCCAGATCTTTACCCCTTGAATAGGTTTAAGTGGCTCATGGATTTCTCGATAGACCACAATTGGTGTGCTGTTGTGAGGAAATTATTAAACATTCTTCTTGATGGAAATGTGAATGTTGGAGATCACCCTTCGTCGAACGCTGCCTTATCTGAGATGGGTATTCTTCACCAGGCTGTAAGGAGAAACGGTAAGGCGCTTGTTGAGCTCCTCTTGAGATATAACCCCAAAAAAGCGAGATGCGAAGAAAATGCAGTGGTTGATGGAGGGGTTGAAGGCTTTTTGTTTAGGCCTGATGTTGCTGGACCTGGAGGCTTGACTCCACTTCACATTGCAGCCGGTAAAGACGGGTCTGAGGATGTCCTGGATGCATTAACCGACGATCCCGACATGGTCGGAATTGAAGCATGGAAGAGCACTCGAGACAGTACGGGGTCCACACCCGAAGATTATGCGCGCTTACGTGGCCATTTCTCATACATCCATCTTGTCCAGAGGAAAATCAATAAGAGGCTTACGCCTGGCCATGTAGTTCTCGACATTCCTACAGTTCTCTCCGAATCTGTGACAAATGTTAAGCAATCCGACAATTTGGGCACTTCTTTCGAGATTGGAACGTCCCAGCCAAGAACCAGTCTTAGGAACTGTAGGTACTGTGATAAGAAACTCACTTATGGAAAATTGAGCAGGTCTCTCGTTTACAGGCCGGCAATGTTGTCGATGGTAGCCATCGCCGCCGTTTGTGTGTGTGTGGCACTTCTGTTCAAGAGCTCGCCGGAAGTTCTTTATTGTTTCCAGCCGTTCAGATGGGAATCGTTAGATTACGGAACAAGCTGA 2862 44.48 MSSVELRALGKRNLDWDLNDWKWDGDLFIASSLNSVPSATLSRQIFPIGTIPETGGSSNSSSSCSDDANMRIEKGKKEIEKRRRITGLEDRALHDETGGLILKLGSHGYPLPERELGSWEGCNGKKTKLVGGSSNRAICQVEDCGADLSKAKDYHRRHKVCEMHSKASRALVGNLMQRFCQQCSRFHVLQEFDEGKRSCRRRLAGHNKRRRKTNPEPAANGSSSNEDQTSGYLLISLLRILSNMHSNQSDQTTYQDLLSHLLRSIAGQSTEHKEKDISEHLQNLQNGISVCNSELASTFLSNGALGPSMPSKQHATLPLSEIPSQGKSKMNDFDLNDIYVDSDDGTEDIERSVLPVHLGASSLESPWAQQDSHQSSPPQTSGNSDSASAQSPSSSSGEAQSRTDRIVIKLFGKVPSDFPHDLRAQVLDWLQHSPTDMESYIRPGCIVLTIYLRQTEDAWDELCYDLSCGLSRLLQGSDDAFWSTGWVYVRIQHHLAFVLHGQVVVDTSLALRNNDYCNIVCVKPIAVSASERVQFLVRGSNLKRPGTSLLCALEGKYLTEKVTQESTDSVDALMEHNEIQCISLSCSIPIVNGRGFIEVEDHGLSSSFFPFIVAEDDVCSDIRVLETELESSDICSDAMGAAVMETRVQAMDFIHEMGWLLHREQLKSRLSNLDPNPDLYPLNRFKWLMDFSIDHNWCAVVRKLLNILLDGNVNVGDHPSSNAALSEMGILHQAVRRNGKALVELLLRYNPKKARCEENAVVDGGVEGFLFRPDVAGPGGLTPLHIAAGKDGSEDVLDALTDDPDMVGIEAWKSTRDSTGSTPEDYARLRGHFSYIHLVQRKINKRLTPGHVVLDIPTVLSESVTNVKQSDNLGTSFEIGTSQPRTSLRNCRYCDKKLTYGKLSRSLVYRPAMLSMVAIAAVCVCVALLFKSSPEVLYCFQPFRWESLDYGTS 953
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 1799600 1804791 - Bma008850.1 Bma13g00158 92887
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma13g00158 953 MobiDBLite consensus disorder prediction 363 401 - -
Bma13g00158 953 Pfam SBP domain 139 212 IPR004333 GO:0003677
Bma13g00158 953 Gene3D - 130 200 IPR036893 GO:0003677|GO:0005634
Bma13g00158 953 Gene3D - 672 848 IPR036770 -
Bma13g00158 953 SUPERFAMILY SBT domain 137 217 IPR036893 GO:0003677|GO:0005634
Bma13g00158 953 MobiDBLite consensus disorder prediction 203 227 - -
Bma13g00158 953 ProSiteProfiles Zinc finger SBP-type profile. 136 213 IPR004333 GO:0003677
Bma13g00158 953 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 8 306 IPR044817 GO:0003677
Bma13g00158 953 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 320 952 IPR044817 GO:0003677
Bma13g00158 953 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 1-RELATED 8 306 - -
Bma13g00158 953 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 1-RELATED 320 952 - -
Bma13g00158 953 SUPERFAMILY Ankyrin repeat 691 838 IPR036770 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma06g01452 Bma-Chr6:51211524 Bma13g00158 Bma-Chr13:1799600 0 dispersed
Bma07g00383 Bma-Chr7:4729577 Bma13g00158 Bma-Chr13:1799600 1.44E-33 dispersed
Bma10g00932 Bma-Chr10:19270616 Bma13g00158 Bma-Chr13:1799600 3.51E-130 dispersed
Bma13g00158 Bma-Chr13:1799600 Bma13g00108 Bma-Chr13:1098280 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
58201 PF03110 SBP 2.60E-29 No_clan Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma13g00158 - - pvy:116138190 1275.0