Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma13g00167 ATGGGGAAGAAGGAAGAATCTGGCGGAGCAGCTCCCCCACCTCGGCCGACTATTACTTTACCTCCTCGCCCTTCAATGGAGGCTTTTTTTACCGGCGGTCCTGGACCTAGTCCTGGTCCTTTGACTCTCGTCTCCAGCTTTTTCGCCGACACCCCGAGCGACTCCCCGGAGTTTCGGTCGTTTTCTCAGTTACTCGCCGGAGCTATGGGCTCGCCAATGGCTGTGGGTTTCTTTGGATCCAATTCGAGCCAGAATTCTTCTTTCAAGGAGGGAGGTGGTTCGGAGAAGGAACTGGGGTTTAAGCAAAGTAGGCCGGTGAATTTGGTGGTTGCTCGGTCTCCTATGTTTACAGTTCCACCTGGTTTGAGTCCATCTGGGTTGCTTAATTCGCCAGGATTCTTTTCACCTCAGAGTCCCTTTGGAATGTCCCACCAGCAGGTTCTTGCTCAGGTTACTGCTCAAGCTGCCCTAGCCCAGTCTCACATGCACAGGCAAGCGCCTGCAGATTATCCACCATCTTCAGCCCCTCCAATGGATTCATTGGCATTGATACGACATCCATCATTTAATGTCGACGAAACTTCACAAAAGTCTATATCAGATCCCAAAAGTTCTATGATCGAATCAGCAGAGGTCTCTCACTCTGACAGGAAATATCAACCTCCTCCACATGCCGCTGATAAACCAATAGATGATGGATACAACTGGAGAAAGTATGGCCAGAAGCAGGTTAAAGGCAGTGAATTTCCACGAAGCTATTATAAATGCTCACATCAGAATTGCCCCGTCAAAAAGAAGGTTGAGCGTTCTCCTGACAGCCATATTACTGAAATTATCATCAAAGGCCAGCACAACCATGATCCACCTCAACCCAATAAACGTTCGAAAGATGGTGGTGAAGCAACTGGCCTTGTACGTTCCCTCCCTACGACAGAAGTCAACTCACATATCAGCACCCGAAATTTTAAAAAGTCAAGCGAAGCTGTTCAAGCGGGTTCCAGTGACAGCGAAGAATTGCGTGAAATAGAGAGAACAGAAGACAGGGATGTTGATGAGCCAAATCCAAAAAGGCAGAACATAGATGGGGGGAGATCTGGGGTTAGTTCGGCTACAAAGACACTTACAGAACCGAAAATCATAGTTCAAACACGAAGTGAGGTTGATCTTTTAGATGATGGCTATAGATGGCGCAAGTACGGCCAAAAGGTGGTCAAAGGAAATCCTTATCCAAGGAGCTACTATAGATGCACTCATGTCGGATGCAATGTTCGTAAGCACGTTGAGAGAGCCTCAACAGATCCCAAGGCCGTAATAACGACGTATGAAGGAAAACACAATCACGACCTTCCAGCAGCAAGAAGTGGTAGCCACAACACAGCCAACAACAACTCCCTGGAAATTAAACCACTCAGGGTTGTGGCTCAAAAACACCCATTACTCAAAGACATGGACTTTGGAAATAATGAACAGAGACCTGTTGTTTTGCAGCTTAAAGAAGAGAAAATTACAGTATAA 1515 47.0 MGKKEESGGAAPPPRPTITLPPRPSMEAFFTGGPGPSPGPLTLVSSFFADTPSDSPEFRSFSQLLAGAMGSPMAVGFFGSNSSQNSSFKEGGGSEKELGFKQSRPVNLVVARSPMFTVPPGLSPSGLLNSPGFFSPQSPFGMSHQQVLAQVTAQAALAQSHMHRQAPADYPPSSAPPMDSLALIRHPSFNVDETSQKSISDPKSSMIESAEVSHSDRKYQPPPHAADKPIDDGYNWRKYGQKQVKGSEFPRSYYKCSHQNCPVKKKVERSPDSHITEIIIKGQHNHDPPQPNKRSKDGGEATGLVRSLPTTEVNSHISTRNFKKSSEAVQAGSSDSEELREIERTEDRDVDEPNPKRQNIDGGRSGVSSATKTLTEPKIIVQTRSEVDLLDDGYRWRKYGQKVVKGNPYPRSYYRCTHVGCNVRKHVERASTDPKAVITTYEGKHNHDLPAARSGSHNTANNNSLEIKPLRVVAQKHPLLKDMDFGNNEQRPVVLQLKEEKITV 504
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 1952044 1955059 - Bma008858.1 Bma13g00167 92896
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma13g00167 504 MobiDBLite consensus disorder prediction 1 35 - -
Bma13g00167 504 Pfam WRKY DNA -binding domain 231 286 IPR003657 GO:0003700|GO:0006355|GO:0043565
Bma13g00167 504 Pfam WRKY DNA -binding domain 391 447 IPR003657 GO:0003700|GO:0006355|GO:0043565
Bma13g00167 504 MobiDBLite consensus disorder prediction 334 358 - -
Bma13g00167 504 MobiDBLite consensus disorder prediction 261 294 - -
Bma13g00167 504 MobiDBLite consensus disorder prediction 79 100 - -
Bma13g00167 504 Gene3D WRKY domain 223 290 IPR036576 GO:0003700|GO:0006355|GO:0043565
Bma13g00167 504 Gene3D WRKY domain 375 451 IPR036576 GO:0003700|GO:0006355|GO:0043565
Bma13g00167 504 SMART WRKY_cls 390 449 IPR003657 GO:0003700|GO:0006355|GO:0043565
Bma13g00167 504 SMART WRKY_cls 230 288 IPR003657 GO:0003700|GO:0006355|GO:0043565
Bma13g00167 504 MobiDBLite consensus disorder prediction 155 235 - -
Bma13g00167 504 MobiDBLite consensus disorder prediction 189 209 - -
Bma13g00167 504 PANTHER WRKY PROTEIN 10 503 - -
Bma13g00167 504 ProSiteProfiles WRKY domain profile. 225 289 IPR003657 GO:0003700|GO:0006355|GO:0043565
Bma13g00167 504 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 10 503 IPR044810 GO:0003700
Bma13g00167 504 MobiDBLite consensus disorder prediction 307 333 - -
Bma13g00167 504 SUPERFAMILY WRKY DNA-binding domain 228 289 IPR036576 GO:0003700|GO:0006355|GO:0043565
Bma13g00167 504 MobiDBLite consensus disorder prediction 210 235 - -
Bma13g00167 504 SUPERFAMILY WRKY DNA-binding domain 382 450 IPR036576 GO:0003700|GO:0006355|GO:0043565
Bma13g00167 504 MobiDBLite consensus disorder prediction 261 371 - -
Bma13g00167 504 ProSiteProfiles WRKY domain profile. 385 450 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma11g00956 Bma-Chr11:42675043 Bma13g00167 Bma-Chr13:1952044 8.42E-16 dispersed
Bma13g00167 Bma-Chr13:1952044 Bma13g01107 Bma-Chr13:44028849 2.54E-79 dispersed
Bma13g00167 Bma-Chr13:1952044 Bma13g00171 Bma-Chr13:1999694 0 proximal
Bma06g01363 Bma-Chr6:50485176 Bma13g00167 Bma-Chr13:1952044 1.03E-16 transposed
Bma15g00141 Bma-Chr15:1491371 Bma13g00167 Bma-Chr13:1952044 1.09E-90 transposed
Bma13g00167 Bma-Chr13:1952044 Bma14g01445 Bma-Chr14:27854253 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
58203 PF03106 WRKY 7.30E-26 CL0274 Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma13g00167 - - csv:101223114 674.47