Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma13g00171 ATGGGGAAGAAGGAAGAATCTGGCGGAGCAGCTCCCCCACCTCGGCCGACTATTACTTTACCTCCTCGCCCTTCAATGGAGGCTTTTTTTACCGGCGGTCCTGGACCTAGTCCTGGTCCTTTGACTCTCGTCTCCAGCTTTTTCGCCGACACCCCGAGCGACTCCCCGGAGTTTCGGTCGTTTTCTCAGTTACTCGCCGGAGCTATGGGCTCGCCAATGGCTGTGGGTTTCTTTGGATCCAATTCGAGCCAGAATTCTTCTTTCAAGGAGGGAGGTGGTTCGGAGAAGGAACTGGGGTTTAAGCAAAGTAGGCCGGTGAATTTGGTGGTTGCTCGGTCTCCTATGTTTACAGTTCCACCTGGTTTGAGTCCATCTGGGTTGCTTAATTCGCCAGGATTCTTTTCACCTCAGAGTCCCTTTGGAATGTCCCACCAGCAGGTTCTTGCTCAGGTTACTGCTCAAGCTGCCCTAGCCCAGTCTCACATGCACATGCAAGCGCCTGCAGATTATCCACCATCTTCGGCCCCTCCAATGGATTCATTGGCATTGATACGACATCCATCATTTAATGTCGACGAAACTTCACAAAAGTCTATATCAGATCCCAAAAGTTCTATGTTCGAATCAGCAGAGGTCTCTCACTCTGACAGGAAATATCAACCTCCTCCACTTGCCGTTGATAAACCAACAGATGATGGATACAACTGGAGAAAGTATGGCCAGAAGCAGGTTAAAGGCAGTGAATTTCCACGCAGCTATTATAAATGCTCACATCAGAATTGCCCCGTCAAAAAGAAGGTTGAGCGTTCTCCTGACGGCCATATTACTGAAATTATCATCAAAGGCCAGCACAACCATGATCCACCTCAACCCAATAAACGTTCGAAAGATGGTGGTGAAGCAACTGGCCTTGTACGTTCCCTCCCTACGACAGAAGTCAACTCACATATCAGCACCCGAAATTTTAAAAAGTCAAGCGAAGCTGTTCAAGCGGGTTCCAGTGACAGCGAAGAATTGCGTGAAATAGAGAGAACAGAAGAGAAGGATGTTGATGAGCCAAATCCAAAAAGGCAGAACATAGATGGGGGGAGATCTGGGGTTAGTTCGGCTACAAAGACACTTACAGAACCGAAAATCATAGTTCAAACACGAAGTGAGGTTGATCTTTTAGATGATGGCTATAGATGGCGCAAGTACGGCCAAAAGGTGGTCAAAGGAAATCCTTATCCAAGGAGCTACTATAGATGCACTCACGTCGGATGCAATGTTCGTAAGCACGTTGAGAGAGCCTCAACAGATCCCAAGGCCGTAATAACGACGTATGAAGGAAAACACAATCACGACCTTCCAGCAGCAAGAAGTGGTAGCCACAACACAGCCAACAACAACTCCCTGGAAATTAAACCACTCAGGGTTGTGGCTCAAAAACACCCATTACTCAAAGACATGGACTTTGGAAATAATGAACAGAGACCTGTTGTTTTGCAGCTTAAAGAAGAGAAAATTACAGTA 1512 47.22 MGKKEESGGAAPPPRPTITLPPRPSMEAFFTGGPGPSPGPLTLVSSFFADTPSDSPEFRSFSQLLAGAMGSPMAVGFFGSNSSQNSSFKEGGGSEKELGFKQSRPVNLVVARSPMFTVPPGLSPSGLLNSPGFFSPQSPFGMSHQQVLAQVTAQAALAQSHMHMQAPADYPPSSAPPMDSLALIRHPSFNVDETSQKSISDPKSSMFESAEVSHSDRKYQPPPLAVDKPTDDGYNWRKYGQKQVKGSEFPRSYYKCSHQNCPVKKKVERSPDGHITEIIIKGQHNHDPPQPNKRSKDGGEATGLVRSLPTTEVNSHISTRNFKKSSEAVQAGSSDSEELREIERTEEKDVDEPNPKRQNIDGGRSGVSSATKTLTEPKIIVQTRSEVDLLDDGYRWRKYGQKVVKGNPYPRSYYRCTHVGCNVRKHVERASTDPKAVITTYEGKHNHDLPAARSGSHNTANNNSLEIKPLRVVAQKHPLLKDMDFGNNEQRPVVLQLKEEKITV 504
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 1999694 2002330 - Bma030565 Bma13g00171 92900
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma13g00171 504 MobiDBLite consensus disorder prediction 1 35 - -
Bma13g00171 504 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 10 503 IPR044810 GO:0003700
Bma13g00171 504 PANTHER WRKY PROTEIN 10 503 - -
Bma13g00171 504 MobiDBLite consensus disorder prediction 79 99 - -
Bma13g00171 504 MobiDBLite consensus disorder prediction 334 358 - -
Bma13g00171 504 MobiDBLite consensus disorder prediction 280 371 - -
Bma13g00171 504 SUPERFAMILY WRKY DNA-binding domain 229 289 IPR036576 GO:0003700|GO:0006355|GO:0043565
Bma13g00171 504 Gene3D WRKY domain 375 451 IPR036576 GO:0003700|GO:0006355|GO:0043565
Bma13g00171 504 Gene3D WRKY domain 224 290 IPR036576 GO:0003700|GO:0006355|GO:0043565
Bma13g00171 504 MobiDBLite consensus disorder prediction 189 209 - -
Bma13g00171 504 SMART WRKY_cls 230 288 IPR003657 GO:0003700|GO:0006355|GO:0043565
Bma13g00171 504 SMART WRKY_cls 390 449 IPR003657 GO:0003700|GO:0006355|GO:0043565
Bma13g00171 504 MobiDBLite consensus disorder prediction 280 294 - -
Bma13g00171 504 MobiDBLite consensus disorder prediction 307 333 - -
Bma13g00171 504 MobiDBLite consensus disorder prediction 160 239 - -
Bma13g00171 504 SUPERFAMILY WRKY DNA-binding domain 382 450 IPR036576 GO:0003700|GO:0006355|GO:0043565
Bma13g00171 504 Pfam WRKY DNA -binding domain 231 286 IPR003657 GO:0003700|GO:0006355|GO:0043565
Bma13g00171 504 Pfam WRKY DNA -binding domain 391 447 IPR003657 GO:0003700|GO:0006355|GO:0043565
Bma13g00171 504 ProSiteProfiles WRKY domain profile. 385 450 IPR003657 GO:0003700|GO:0006355|GO:0043565
Bma13g00171 504 ProSiteProfiles WRKY domain profile. 225 289 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma06g01363 Bma-Chr6:50485176 Bma13g00171 Bma-Chr13:1999694 6.35E-17 dispersed
Bma07g00734 Bma-Chr7:19462514 Bma13g00171 Bma-Chr13:1999694 2.51E-53 dispersed
Bma10g00588 Bma-Chr10:7220605 Bma13g00171 Bma-Chr13:1999694 5.68E-85 dispersed
Bma11g00638 Bma-Chr11:11028394 Bma13g00171 Bma-Chr13:1999694 1.40E-15 dispersed
Bma13g00171 Bma-Chr13:1999694 Bma14g01445 Bma-Chr14:27854253 0 dispersed
Bma13g00167 Bma-Chr13:1952044 Bma13g00171 Bma-Chr13:1999694 0 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
58204 PF03106 WRKY 7.30E-26 CL0274 Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma13g00171 - - csv:101223114 669.077