Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Bma13g00171 | ATGGGGAAGAAGGAAGAATCTGGCGGAGCAGCTCCCCCACCTCGGCCGACTATTACTTTACCTCCTCGCCCTTCAATGGAGGCTTTTTTTACCGGCGGTCCTGGACCTAGTCCTGGTCCTTTGACTCTCGTCTCCAGCTTTTTCGCCGACACCCCGAGCGACTCCCCGGAGTTTCGGTCGTTTTCTCAGTTACTCGCCGGAGCTATGGGCTCGCCAATGGCTGTGGGTTTCTTTGGATCCAATTCGAGCCAGAATTCTTCTTTCAAGGAGGGAGGTGGTTCGGAGAAGGAACTGGGGTTTAAGCAAAGTAGGCCGGTGAATTTGGTGGTTGCTCGGTCTCCTATGTTTACAGTTCCACCTGGTTTGAGTCCATCTGGGTTGCTTAATTCGCCAGGATTCTTTTCACCTCAGAGTCCCTTTGGAATGTCCCACCAGCAGGTTCTTGCTCAGGTTACTGCTCAAGCTGCCCTAGCCCAGTCTCACATGCACATGCAAGCGCCTGCAGATTATCCACCATCTTCGGCCCCTCCAATGGATTCATTGGCATTGATACGACATCCATCATTTAATGTCGACGAAACTTCACAAAAGTCTATATCAGATCCCAAAAGTTCTATGTTCGAATCAGCAGAGGTCTCTCACTCTGACAGGAAATATCAACCTCCTCCACTTGCCGTTGATAAACCAACAGATGATGGATACAACTGGAGAAAGTATGGCCAGAAGCAGGTTAAAGGCAGTGAATTTCCACGCAGCTATTATAAATGCTCACATCAGAATTGCCCCGTCAAAAAGAAGGTTGAGCGTTCTCCTGACGGCCATATTACTGAAATTATCATCAAAGGCCAGCACAACCATGATCCACCTCAACCCAATAAACGTTCGAAAGATGGTGGTGAAGCAACTGGCCTTGTACGTTCCCTCCCTACGACAGAAGTCAACTCACATATCAGCACCCGAAATTTTAAAAAGTCAAGCGAAGCTGTTCAAGCGGGTTCCAGTGACAGCGAAGAATTGCGTGAAATAGAGAGAACAGAAGAGAAGGATGTTGATGAGCCAAATCCAAAAAGGCAGAACATAGATGGGGGGAGATCTGGGGTTAGTTCGGCTACAAAGACACTTACAGAACCGAAAATCATAGTTCAAACACGAAGTGAGGTTGATCTTTTAGATGATGGCTATAGATGGCGCAAGTACGGCCAAAAGGTGGTCAAAGGAAATCCTTATCCAAGGAGCTACTATAGATGCACTCACGTCGGATGCAATGTTCGTAAGCACGTTGAGAGAGCCTCAACAGATCCCAAGGCCGTAATAACGACGTATGAAGGAAAACACAATCACGACCTTCCAGCAGCAAGAAGTGGTAGCCACAACACAGCCAACAACAACTCCCTGGAAATTAAACCACTCAGGGTTGTGGCTCAAAAACACCCATTACTCAAAGACATGGACTTTGGAAATAATGAACAGAGACCTGTTGTTTTGCAGCTTAAAGAAGAGAAAATTACAGTA | 1512 | 47.22 | MGKKEESGGAAPPPRPTITLPPRPSMEAFFTGGPGPSPGPLTLVSSFFADTPSDSPEFRSFSQLLAGAMGSPMAVGFFGSNSSQNSSFKEGGGSEKELGFKQSRPVNLVVARSPMFTVPPGLSPSGLLNSPGFFSPQSPFGMSHQQVLAQVTAQAALAQSHMHMQAPADYPPSSAPPMDSLALIRHPSFNVDETSQKSISDPKSSMFESAEVSHSDRKYQPPPLAVDKPTDDGYNWRKYGQKQVKGSEFPRSYYKCSHQNCPVKKKVERSPDGHITEIIIKGQHNHDPPQPNKRSKDGGEATGLVRSLPTTEVNSHISTRNFKKSSEAVQAGSSDSEELREIERTEEKDVDEPNPKRQNIDGGRSGVSSATKTLTEPKIIVQTRSEVDLLDDGYRWRKYGQKVVKGNPYPRSYYRCTHVGCNVRKHVERASTDPKAVITTYEGKHNHDLPAARSGSHNTANNNSLEIKPLRVVAQKHPLLKDMDFGNNEQRPVVLQLKEEKITV | 504 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
13 | 1999694 | 2002330 | - | Bma030565 | Bma13g00171 | 92900 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Bma13g00171 | 504 | MobiDBLite | consensus disorder prediction | 1 | 35 | - | - | |
Bma13g00171 | 504 | PANTHER | WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED | 10 | 503 | IPR044810 | GO:0003700 | |
Bma13g00171 | 504 | PANTHER | WRKY PROTEIN | 10 | 503 | - | - | |
Bma13g00171 | 504 | MobiDBLite | consensus disorder prediction | 79 | 99 | - | - | |
Bma13g00171 | 504 | MobiDBLite | consensus disorder prediction | 334 | 358 | - | - | |
Bma13g00171 | 504 | MobiDBLite | consensus disorder prediction | 280 | 371 | - | - | |
Bma13g00171 | 504 | SUPERFAMILY | WRKY DNA-binding domain | 229 | 289 | IPR036576 | GO:0003700|GO:0006355|GO:0043565 | |
Bma13g00171 | 504 | Gene3D | WRKY domain | 375 | 451 | IPR036576 | GO:0003700|GO:0006355|GO:0043565 | |
Bma13g00171 | 504 | Gene3D | WRKY domain | 224 | 290 | IPR036576 | GO:0003700|GO:0006355|GO:0043565 | |
Bma13g00171 | 504 | MobiDBLite | consensus disorder prediction | 189 | 209 | - | - | |
Bma13g00171 | 504 | SMART | WRKY_cls | 230 | 288 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Bma13g00171 | 504 | SMART | WRKY_cls | 390 | 449 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Bma13g00171 | 504 | MobiDBLite | consensus disorder prediction | 280 | 294 | - | - | |
Bma13g00171 | 504 | MobiDBLite | consensus disorder prediction | 307 | 333 | - | - | |
Bma13g00171 | 504 | MobiDBLite | consensus disorder prediction | 160 | 239 | - | - | |
Bma13g00171 | 504 | SUPERFAMILY | WRKY DNA-binding domain | 382 | 450 | IPR036576 | GO:0003700|GO:0006355|GO:0043565 | |
Bma13g00171 | 504 | Pfam | WRKY DNA -binding domain | 231 | 286 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Bma13g00171 | 504 | Pfam | WRKY DNA -binding domain | 391 | 447 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Bma13g00171 | 504 | ProSiteProfiles | WRKY domain profile. | 385 | 450 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Bma13g00171 | 504 | ProSiteProfiles | WRKY domain profile. | 225 | 289 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Bma06g01363 | Bma-Chr6:50485176 | Bma13g00171 | Bma-Chr13:1999694 | 6.35E-17 | dispersed | |
Bma07g00734 | Bma-Chr7:19462514 | Bma13g00171 | Bma-Chr13:1999694 | 2.51E-53 | dispersed | |
Bma10g00588 | Bma-Chr10:7220605 | Bma13g00171 | Bma-Chr13:1999694 | 5.68E-85 | dispersed | |
Bma11g00638 | Bma-Chr11:11028394 | Bma13g00171 | Bma-Chr13:1999694 | 1.40E-15 | dispersed | |
Bma13g00171 | Bma-Chr13:1999694 | Bma14g01445 | Bma-Chr14:27854253 | 0 | dispersed | |
Bma13g00167 | Bma-Chr13:1952044 | Bma13g00171 | Bma-Chr13:1999694 | 0 | proximal |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
58204 | PF03106 | WRKY | 7.30E-26 | CL0274 | Bma | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Bma13g00171 | - | - | csv:101223114 | 669.077 |