Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma13g00182 ATGGGTTGCTTTGCTTTTTCTTTCTTCTTCCTCGAATGGCAATTTTTACACAATACCCTATCTTCAAAGCTTGTCCTGAAGTATTTATTGTTTCTCTGTCTGTTTTCAATCTCTCTGAACGATGTTGTTCTTTGCGACTCCGATAAATCAGTGCTTCTTCAGTTCAAGAAATCGGTTTCTGATCCATCGGGATTGCTCTCGAGCTGGAGCTCTATCAATTCTGATCACTGTTCTTGGTTTGGCGTCTCTTGCGACTCCAATTCTCGCGTCGTCTCACTCAATATTTCTGGTAGTGGCAACAGAGGTAACTCCAGTGCTTTTTCGTGCTCTGATTTTACTAAATTCCCGCTTTATGGGTTAGATATTCGGAGGACGTGTCGGGGAAATGGTGGAATATTGGTTGGGAAACTATCGCCAATTATTGGAAGTCTGCGCGAGCTTAGGATTTTGTCACTGCCTTTTAATGGTTTCGAAGGTGAAGTACCTGATGAAGTCTGGGGTTTAGAGAACTTAGAAGTTCTTGATCTCGAAGACAATTTGATAACTGGGTTACTTCCGAAACATCTATCAGTTTTGAACAATCTGCGGGTTCTTAACCTCGCCTTCAATAAAATCGAGGGTGATTTTCCTAGCTCGCTGGGCTATTCTCTGCATTTAGAGGTCTTAAATTTAGCCGGGAATCAATTGAATGGGACGATTCCGGGGCTGGTTGGTCGTATGAAAGCTGTTTATTTGTCATTCAATTGGCTATCTGGGTCTATTCCAATCGAACTAGGGGAAGACTGTGGGAAGCTAGAGCACCTAGACTTGTCAGGTAATTACTTAGTCCACAGAATTCCAAGTAGTTTGGGAAATTGCAGTAAGTTAAGGACTCTATTGCTTTACTCAAATATGTTGGAAGAGAGTATACCCTCTGAACTTGGGCAGCTTAAGAAGCTTGAGGTGGTTGATGTTTCTAGGAACAGCCTCAGCGGTGCAATACCCCACGAGCTTGGAAATTGTGTTGAATTGTCTGTTCTTGTACTTTCCAATCTGTTTGATCCACTACCTCGGATCAAAAACACCGAAGGGAACTTTCTGTTGGAGGAAATGAGTAATGATGACTTTAATTTTTTTCAAGGTGCAATGCCTATGGAAATTGCTATGCTTCCAAAGCTGAGGATTTTGTGGGCACCAAGGGCAAGCCTGGAGGGTAATTTCTCCAGCAACTGGGGTAGCTGTGAAAAGTTACAGATGGTGAGCTTGGCTCAGAATTTCCTATCTGGAGAATTTCCTCAAAGCCTTAGTCGTTGTAAGAAGCTACAATTTCTTGATTTGAGCAGTAATAAGCTTTCTGGGGAACTCAACGAAGAACTTTCAGTACCTTGCATGAGATTGTTTGATATCAGTAAGAACCATTTATCAGGTCCTATTCCTAGATTTGTAAACAGCTCATGCCTTTCTTTTACTGCCTTTAATGAACATGCTTCTGAATCGGACAATCCATCCTCTGTATATGTATCATTTTTCGAAACTAAGATTCGGGAGGCAGTCGATTTTCATTTCGTCAAACATGATGACTTTGTGGTTTTTCACAACTTTGGGCAAAATAATTTCACCGGCGGTTTCCAATCTATGCCTATTGCTCCTGAAAGATTAGGAAGACAGACTGCTTATGTATATATTGCTGGAGAAAACAAGCTTACCGGACCTTTTCCTGGAAACTTATTTGATAATTGTCGTGGATTGGGGGCGTTGATAGTTAATGTTAGCTATAACAGAATATCTGGTCAGATTCCTAGTCACTTTGGTAAAATGTGCAGCGCCTTAAAATATTTGGATGCATCTGGAAATCAAATTTGTGGGCCAATCAGCACGAGTTTTGGTGATATGGTATCTCTTGACGAACTGAACCTTAGTCGGAATATGTTGGAAGGTTTCATTCCAGCCAGTCTTGGTCAGTTAACATATCTGAGATACCTTTCTTTGGCTAATAATCGCTTAAATGGCTCCATTCCTTCCAGCTTGGGGCGGTTGCAGGCATTAAAAAGGCTAGATCTTTCTTCCAACTCTCTCGTTGACGTAATTCCGAATGATCTTGTAAACTTGAGGAATCTGACTGTTCTCCTACTCACAAACAATAATCTATCGGGGCAGATTCCTTCCGATTTGGCAAATGTGACCACTCTCTCGGTCTTCAATGTCTCGTTCAATAATTTGTCTGGGTCCCTGCCTTTGGATAACAACTTCATGAAATGCAATAGTGCTCTTGGAAATCCGCATGTAGTTTCTTGTCCTGTTTCTAATCTGATGGTGTCATCATCCACTACACAAGGAAGTGATGGCGATGCAAGTAATTATGCAGCTTCACCACCCGGAACTGTAACCCAGACAAGTGGAGGTAATGGCTTTAATTCGATTGAGATTGCATCCATAGCTTCTGCGTCGGCCATTGTCTCGGTTCTTCTAGCTTTGATCGTTCTTTTCTTTTACACCCGAAAATGGAACCCCAAATCTAAAGTTATTGCTGTGACTAGAAAGGAAGTGGCAGTTTTCACAGACATTGGGATTCCTCTGAACTTCGACAGCGTCGTGAGGGCGACAGGAAACTTCAACGCCAGTAATTGCATCGGCAATGGAGGTTTTGGGGCGACCTACAAAGCGGAGATCTCTGCCGGAGTTCTAGTGGCCATAAAACGACTTTCTGTTGGCCGATTTCAGGGAGTTCAACAGTTCCACGCAGAGATCAAGACTCTCGGGAGGTTTCGCCATCCAAATCTCGTCACTCTAATTGGATATCATGCAAGTGAGACGGAGATGTTTCTGATATACAATTATTTGCCTGGTGGTAATTTGGAGAAATTCATCCATGAAAGATCAACTAGGGCCGTTCATTGGAGAATTCTTCACAAAATCGCATTAGACATAGCCCGCGCACTTGCCTACCTTCACGATCAATGTGTGCCACGTGTCCTCCATCGAGACGTCAAGCCGAGTAATATCTTGTTAGATGATGATCTCAATGCATATCTATCCGATTTTGGATTGGCCAGGCTATTGGGTACTTCCGAAACACATGCCACTACGGGTGTGGCCGGAACTTTTGGGTATGTTGCTCCTGAATATGCAATGACTTGCCGTGTCTCGGACAAGGCCGATGTCTATAGTTATGGAGTGGTGCTACTTGAGTTGCTTTCCGACAAGAAAGCTCTTGATCCTTCGTTTTCGCCTTACGGAAACGGCTTCAACATAGTTGCTTGGGCCTGTATGCTTCTAAGGCAGGGCCGGGCTAAAGAGTTCTTTACAGCCGGACTATGGGATGTAGGTCCTCACGATGATTTGGTCGAAGTATTGCACTTGGCCGTGGTTTGTACCGTCGATTCTCTCTCGACGAGACCGACTATGAAGCAAGTTGTGAGACGGCTCAAGCAACTTCAACCGCCCTCATGTTAA 3432 43.36 MGCFAFSFFFLEWQFLHNTLSSKLVLKYLLFLCLFSISLNDVVLCDSDKSVLLQFKKSVSDPSGLLSSWSSINSDHCSWFGVSCDSNSRVVSLNISGSGNRGNSSAFSCSDFTKFPLYGLDIRRTCRGNGGILVGKLSPIIGSLRELRILSLPFNGFEGEVPDEVWGLENLEVLDLEDNLITGLLPKHLSVLNNLRVLNLAFNKIEGDFPSSLGYSLHLEVLNLAGNQLNGTIPGLVGRMKAVYLSFNWLSGSIPIELGEDCGKLEHLDLSGNYLVHRIPSSLGNCSKLRTLLLYSNMLEESIPSELGQLKKLEVVDVSRNSLSGAIPHELGNCVELSVLVLSNLFDPLPRIKNTEGNFLLEEMSNDDFNFFQGAMPMEIAMLPKLRILWAPRASLEGNFSSNWGSCEKLQMVSLAQNFLSGEFPQSLSRCKKLQFLDLSSNKLSGELNEELSVPCMRLFDISKNHLSGPIPRFVNSSCLSFTAFNEHASESDNPSSVYVSFFETKIREAVDFHFVKHDDFVVFHNFGQNNFTGGFQSMPIAPERLGRQTAYVYIAGENKLTGPFPGNLFDNCRGLGALIVNVSYNRISGQIPSHFGKMCSALKYLDASGNQICGPISTSFGDMVSLDELNLSRNMLEGFIPASLGQLTYLRYLSLANNRLNGSIPSSLGRLQALKRLDLSSNSLVDVIPNDLVNLRNLTVLLLTNNNLSGQIPSDLANVTTLSVFNVSFNNLSGSLPLDNNFMKCNSALGNPHVVSCPVSNLMVSSSTTQGSDGDASNYAASPPGTVTQTSGGNGFNSIEIASIASASAIVSVLLALIVLFFYTRKWNPKSKVIAVTRKEVAVFTDIGIPLNFDSVVRATGNFNASNCIGNGGFGATYKAEISAGVLVAIKRLSVGRFQGVQQFHAEIKTLGRFRHPNLVTLIGYHASETEMFLIYNYLPGGNLEKFIHERSTRAVHWRILHKIALDIARALAYLHDQCVPRVLHRDVKPSNILLDDDLNAYLSDFGLARLLGTSETHATTGVAGTFGYVAPEYAMTCRVSDKADVYSYGVVLLELLSDKKALDPSFSPYGNGFNIVAWACMLLRQGRAKEFFTAGLWDVGPHDDLVEVLHLAVVCTVDSLSTRPTMKQVVRRLKQLQPPSC 1143
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 2092406 2095837 + Bma008872.1 Bma13g00182 92911
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma13g00182 1143 Gene3D Ribonuclease Inhibitor 360 496 IPR032675 -
Bma13g00182 1143 SMART serkin_6 864 1142 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bma13g00182 1143 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 24 1142 - -
Bma13g00182 1143 Gene3D Transferase(Phosphotransferase) domain 1 940 1140 - -
Bma13g00182 1143 Gene3D Phosphorylase Kinase; domain 1 827 939 - -
Bma13g00182 1143 SUPERFAMILY L domain-like 554 746 - -
Bma13g00182 1143 CDD STKc_IRAK 870 1138 - -
Bma13g00182 1143 ProSiteProfiles Protein kinase domain profile. 864 1138 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bma13g00182 1143 Pfam Leucine rich repeat 650 709 IPR001611 GO:0005515
Bma13g00182 1143 Pfam Leucine rich repeat 145 205 IPR001611 GO:0005515
Bma13g00182 1143 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE RPK2 24 1142 - -
Bma13g00182 1143 Pfam Leucine Rich Repeat 264 286 IPR001611 GO:0005515
Bma13g00182 1143 ProSitePatterns Protein kinases ATP-binding region signature. 870 892 IPR017441 GO:0005524
Bma13g00182 1143 Pfam Protein kinase domain 867 1065 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bma13g00182 1143 SMART LRR_typ_2 168 191 IPR003591 -
Bma13g00182 1143 SMART LRR_typ_2 192 216 IPR003591 -
Bma13g00182 1143 SMART LRR_typ_2 672 695 IPR003591 -
Bma13g00182 1143 SMART LRR_typ_2 262 286 IPR003591 -
Bma13g00182 1143 SMART LRR_typ_2 624 648 IPR003591 -
Bma13g00182 1143 SMART LRR_typ_2 696 719 IPR003591 -
Bma13g00182 1143 SMART LRR_typ_2 310 334 IPR003591 -
Bma13g00182 1143 ProSitePatterns Serine/Threonine protein kinases active-site signature. 984 996 IPR008271 GO:0004672|GO:0006468
Bma13g00182 1143 Gene3D Ribonuclease Inhibitor 44 241 IPR032675 -
Bma13g00182 1143 SUPERFAMILY Protein kinase-like (PK-like) 850 1135 IPR011009 -
Bma13g00182 1143 Pfam Leucine rich repeat N-terminal domain 46 85 IPR013210 -
Bma13g00182 1143 SUPERFAMILY L domain-like 47 345 - -
Bma13g00182 1143 Gene3D Ribonuclease Inhibitor 522 771 IPR032675 -
Bma13g00182 1143 Gene3D Ribonuclease Inhibitor 242 352 IPR032675 -
Bma13g00182 1143 PRINTS Leucine-rich repeat signature 672 685 - -
Bma13g00182 1143 PRINTS Leucine-rich repeat signature 434 447 - -
Bma13g00182 1143 SUPERFAMILY L domain-like 369 475 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g00123 Bma-Chr1:1222294 Bma13g00182 Bma-Chr13:2092406 0 dispersed
Bma13g00182 Bma-Chr13:2092406 Bma14g01466 Bma-Chr14:28687846 0 dispersed
Bma13g00182 Bma-Chr13:2092406 Bma04g01039 Bma-Chr4:18724369 6.03E-135 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
66839 PF00069 Pkinase 3.20E-43 CL0016 Bma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma13g00182 - - zju:107415929 1570.83