Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma13g00189 ATGGCGTTTCTGTTTATACCCATGTTTAGATCAGTCTCCAGGTTCTTAAGCTGTACCATTTTGGTCGAGCTCCTTTTCTTCACAAGCTTTACTTCGACAGAAGCATATGATGCACTTGATCCAACTGGAAACATCACCATCAAATGGGACATTATTGCTTGGACTGCTGATGGCTACATGGCTACCGTGACGATTTACAACTTTCAGCAATATCGTCATGTTCAAGCGCCGGGATGGTTGCTAGGATGGACGTGGGCGAAGAGGGAGATAATCTGGAGCATGTTGGGAGGTCAAGCCACAGAGCAAGGAGATTGCTCGAGATTTAAGGGGAATATTCCTCACTGCTGCAAAAAGAATCCGACCGTGGTTGATCTTCTGCCAGGAACTCCTTACAACCAACAAGTTGCCAATTGTTGTAGAGGTGGGGTACTTGCCTCGTGGGTTCAAAACCCGGCCAACTCGGCTAGCTCGTTTCAGATCAGTGTCGGTTCTTCAGGAACCACCAATAAGACGGTGAGAGTGCCGAAGAACTTCACTTTGCATGCACCGGGGCCTGGATATACTTGTGGACCTGGAAAGATAGTTAAACCGAGTAAATTTATGACCACGGATAAAAGAAGAGTCACACAAGCGTTGATGACATGGAACGTTACATGCACATATTCACAATTTCTGGCTGAGAGAACTCCTACTTGTTGCGTCTCACTGTCGTCTTTCTACAATCGCACAATTGTCTCCTGCCCGACATGCTCCTGTGGTTGCCAAAGCAATATGAGTCGGTCTGGTGGCTGTATTACGGAAAAATCGTCACATTTGGCATCGGTTGTTTCAAATCCCGGCACAAAAAATGCTCCTATGATTCAATGTACAAGCCATATGTGTCCAATTAGAGTTCATTGGCATGTCAAACTCAACTATAAAGAATACTGGCGGGTGAAGATTACGGTCACTAATTTCAATTATGCGATGAACTATTCTGACTGGAACTTAGTACTTCAGCATCCAAATTTCGACAATCTGACTAAGATTTTCAGCTTCAACTACGAGTCTCTAAGTCCTTATACATCGATAAATGATACTGGAATGCTGTGGGGAATAAAGTTTTACAACGATCTTCTCATGGAAGCAGGGCCCTTTGGAAATGTACAATCCGAGCTACTCTTTCGGAAAGAAAAATCGACCTTCACTTTTGAAAAGGGTTGGGCGTTTCCTCGAAGGGTTTACTTTAATGGCGATAGCTGCGTTATGCCACCGCCCGATGCATATCCGTGGCTGCCGAATGCCAGTTCTGGCCTTGATATTTCCTTTTCTGCTCTTCTTTTGGCTTACTTTTGTGGCTTGAGTCTCTTGTTCTTCGCTGCTTGA 1365 44.84 MAFLFIPMFRSVSRFLSCTILVELLFFTSFTSTEAYDALDPTGNITIKWDIIAWTADGYMATVTIYNFQQYRHVQAPGWLLGWTWAKREIIWSMLGGQATEQGDCSRFKGNIPHCCKKNPTVVDLLPGTPYNQQVANCCRGGVLASWVQNPANSASSFQISVGSSGTTNKTVRVPKNFTLHAPGPGYTCGPGKIVKPSKFMTTDKRRVTQALMTWNVTCTYSQFLAERTPTCCVSLSSFYNRTIVSCPTCSCGCQSNMSRSGGCITEKSSHLASVVSNPGTKNAPMIQCTSHMCPIRVHWHVKLNYKEYWRVKITVTNFNYAMNYSDWNLVLQHPNFDNLTKIFSFNYESLSPYTSINDTGMLWGIKFYNDLLMEAGPFGNVQSELLFRKEKSTFTFEKGWAFPRRVYFNGDSCVMPPPDAYPWLPNASSGLDISFSALLLAYFCGLSLLFFAA 454
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 2230022 2232381 - Bma008880.1 Bma13g00189 92918
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma13g00189 454 PIRSF COBRA 8 454 IPR006918 GO:0010215|GO:0031225
Bma13g00189 454 Pfam COBRA-like protein 59 222 IPR006918 GO:0010215|GO:0031225
Bma13g00189 454 PANTHER COBRA-LIKE PROTEIN 15 451 - -
Bma13g00189 454 PANTHER PROTEIN COBRA 15 451 IPR006918 GO:0010215|GO:0031225
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma12g00957 Bma-Chr12:41509154 Bma13g00189 Bma-Chr13:2230022 0 dispersed
Bma13g00189 Bma-Chr13:2230022 Bma14g01053 Bma-Chr14:12650933 1.31E-138 dispersed
Bma05g00929 Bma-Chr5:47184372 Bma13g00189 Bma-Chr13:2230022 2.87E-161 transposed
Bma08g00250 Bma-Chr8:3113739 Bma13g00189 Bma-Chr13:2230022 0 transposed
Bma13g00189 Bma-Chr13:2230022 Bma14g01050 Bma-Chr14:12514934 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma13g00189 - - pvy:116109720 770.385