Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Bma13g00190 | TTCTACTCCACCATTGATTTAACACAGATTAGTCAGAAATTGATGGTGCAAGGATACTCTGGTAATGCCAAATATAGTGGGGGTTTGGATGTTGCCCAAAAGCTTATAAAATCAAATGGGATAAGGGGATTATATAAGGGGTTTGGTTTATCTGTCCTCACTTACTCGCCATCTAGTGCTGTATGGTGGGCAAGTTATGGCTCAAGTCAACGCATCATCTGGAGGCTTCTGGGCCAAGGTACTAATCCTGAGGAATCTGTTCCTGGCGAGGCAAAATTAATGTTAGTTCAAGCTAGTGGAGGAATAATAGCAGGTGCAACAGCTTCCTGCATCACCACACCACTGGACACCATTAAAACTCGCCTACAGGTTATGGAGCATGAAAGCAGAAACACTGCGACAGAAGTTGTCAGAGGCTTAATTAGGGAGGAAGGGTGGGCAGGTTTATACAGGGGGTTGGGTCCTAGATTTTTCAGCATGTCTGCATGGGGAACCTCAATGATACTGGCTTATGAATATTTGAGTATGATCTCTTCCTCCTTCCAAACTCCTTGCACTACTAATTAA | 567 | 43.92 | FYSTIDLTQISQKLMVQGYSGNAKYSGGLDVAQKLIKSNGIRGLYKGFGLSVLTYSPSSAVWWASYGSSQRIIWRLLGQGTNPEESVPGEAKLMLVQASGGIIAGATASCITTPLDTIKTRLQVMEHESRNTATEVVRGLIREEGWAGLYRGLGPRFFSMSAWGTSMILAYEYLSMISSSFQTPCTTN | 188 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 13 | 2235522 | 2237002 | + | Bma008881.1 | Bma13g00190 | 92919 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Bma13g00190 | 188 | SUPERFAMILY | Mitochondrial carrier | 10 | 174 | IPR023395 | - | |
| Bma13g00190 | 188 | PANTHER | MITOCHONDRIAL SUBSTRATE CARRIER FAMILY PROTEIN | 7 | 179 | - | - | |
| Bma13g00190 | 188 | Pfam | Mitochondrial carrier protein | 13 | 73 | IPR018108 | - | |
| Bma13g00190 | 188 | Pfam | Mitochondrial carrier protein | 97 | 174 | IPR018108 | - | |
| Bma13g00190 | 188 | ProSiteProfiles | Solute carrier (Solcar) repeat profile. | 92 | 177 | IPR018108 | - | |
| Bma13g00190 | 188 | PANTHER | MITOCHONDRIAL SUBSTRATE CARRIER FAMILY PROTEIN J | 7 | 179 | - | - | |
| Bma13g00190 | 188 | Gene3D | Mitochondrial carrier domain | 7 | 183 | IPR023395 | - | |
| Bma13g00190 | 188 | ProSiteProfiles | Solute carrier (Solcar) repeat profile. | 1 | 72 | IPR018108 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Bma13g00190 | Bma-Chr13:2235522 | Bma15g00327 | Bma-Chr15:3196727 | 1.62E-19 | dispersed | |
| Bma13g00190 | Bma-Chr13:2235522 | Bma01g00866 | Bma-Chr1:8135595 | 7.45E-14 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Bma13g00190 | K15121 | - | qsu:112029797 | 278.485 |