Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma13g00200 ATGGTTGATCAAGCCGATTTAGTTATCATTGGGGTCTCTGTTGGTTTGGCCCTTGGTATTTTGATAGCTTCCCTCCTATTTTTTGGCGTTCGATGGTACAAAAAACGTGCTTCTGTCAGGCGATGTGCAAATGAACGTAGTCAGACAACACTTCCGATGCGGACAAATGGCTTAAGTGTAAGCACCGACTATAGTGCATCTCTCTCGAATTCCATACCTGTCATGGAACCAGAAAGGATTCACAAAAGTTCTCAGCTTGCCCTGTGGAATCGTCATAGTAAAGATCGTTTTGCTTCTGTTTCAGGCATACTTAAATATTGTTACAAAGACATTCAGAAAGCCACGGAGAACTTCACAACTGTTTTGGGACAAGGTTCATTTGGTCCAGTCTATAAAGCAACAATGCCGAATGGGGGAATTGTAGCTGTTAAAGCACTTGCTTCTAACTCCAAACAGGGGGAGAAAGAGTTCCAAACTGAGGTGAGTTTGCTTGGAAGATTGCATCATAGGAATCTTGTGAATTTGCTGGGATACTGCATAGATAAGGGCCAACACATGTTAATTTATGAGTTCATGAGTAATGGAAGTTTGGCCAACCTTCTCTATGATGAGGAAGACCGAGTTTTGAATTGGAATGAAAGACTTCAAATTGCTCTTGATATTTCTCATGGTATCGAATATCTTCATGAAGGGGCAGTTCCTCCTGTCATACATCGAGATCTGAAATCTGCAAATATCCTTTTAGACCAGGCAATGAGAGCCAAGGTTGCTGATTTTGGGTTGTCAAAGGAAGAAGTTTTTGATGGTCGGAATTCGGGTTTGAAAGGTACCTATGGCTACATAGACCCTGCATACATTTCGACAAGTAAGTTCACGTTGAAGAGTGATGTGTACAGTTTTGGGATCATCATTTTCGAACTTATCACAGCCATCCATCCTCACCAAAACTTGATGGAGTATATTAATCTTGTTATAGAGTACATTCAGTTTTTACAAGAGAAGTTATGTTCATACGAAGGATCATATCAACGTTGGAGCTCAGTCTCAGAGCCTACAAAGTTGACACCATGGAGAAATTATAATCGGCGAGCAGAATGTGTGATGGATCCTTCTGAAGTTGTTAACTGCTCCAACCAAGAGAATAACGTAGTCTGCTCTTCAGAAATGCTTACAAACACACAGAGTACTGATGAGCTTCTCTCAAGTACAGAAATAATTTTCAAATCCGTGGATCACCCTTTTAGTTCAACTACCCATGTGCATACAAATGTTTTCACTACAGTTGGTACTGACAACATGCCGACCCAACCTTTGGATGAGTCTGCTTCTGAAGCAGAAAAAAATGCTTCATGGGAGGCTGGGTTATTTACAAATAATGGCCCTCATCCAACCCATACTGGAAACAAGCAGGAAGATTTGATTATAGAAAACAGATCCGAAAGCATCTCAAGCACTTACTCTCAAGGGATACTGAATACTTTGACCTGTGCGCTGCAATCCTCTGGTGTTGACTTGTCACATACCAGCATCTCAGTGAATATAGATGTTAGAAAGAGGGCAATTGATGAAGCGACCCTAAAGGCATCTAGTTCAAAGGTTCATCTTTAA 1608 41.04 MVDQADLVIIGVSVGLALGILIASLLFFGVRWYKKRASVRRCANERSQTTLPMRTNGLSVSTDYSASLSNSIPVMEPERIHKSSQLALWNRHSKDRFASVSGILKYCYKDIQKATENFTTVLGQGSFGPVYKATMPNGGIVAVKALASNSKQGEKEFQTEVSLLGRLHHRNLVNLLGYCIDKGQHMLIYEFMSNGSLANLLYDEEDRVLNWNERLQIALDISHGIEYLHEGAVPPVIHRDLKSANILLDQAMRAKVADFGLSKEEVFDGRNSGLKGTYGYIDPAYISTSKFTLKSDVYSFGIIIFELITAIHPHQNLMEYINLVIEYIQFLQEKLCSYEGSYQRWSSVSEPTKLTPWRNYNRRAECVMDPSEVVNCSNQENNVVCSSEMLTNTQSTDELLSSTEIIFKSVDHPFSSTTHVHTNVFTTVGTDNMPTQPLDESASEAEKNASWEAGLFTNNGPHPTHTGNKQEDLIIENRSESISSTYSQGILNTLTCALQSSGVDLSHTSISVNIDVRKRAIDEATLKASSSKVHL 535
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 2773442 2781818 - Bma008891.2 Bma13g00200 92929
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma13g00200 535 Pfam Protein tyrosine and serine/threonine kinase 118 318 IPR001245 GO:0004672|GO:0006468
Bma13g00200 535 Gene3D Phosphorylase Kinase; domain 1 81 191 - -
Bma13g00200 535 Gene3D Transferase(Phosphotransferase) domain 1 192 378 - -
Bma13g00200 535 PANTHER CALCIUM/CALMODULIN-REGULATED RECEPTOR-LIKE KINASE 2 9 324 - -
Bma13g00200 535 SUPERFAMILY Protein kinase-like (PK-like) 98 328 IPR011009 -
Bma13g00200 535 ProSitePatterns Serine/Threonine protein kinases active-site signature. 236 248 IPR008271 GO:0004672|GO:0006468
Bma13g00200 535 ProSiteProfiles Protein kinase domain profile. 116 415 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bma13g00200 535 SMART serkin_6 116 510 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bma13g00200 535 PANTHER OS01G0750732 PROTEIN 9 324 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g00134 Bma-Chr1:1304591 Bma13g00200 Bma-Chr13:2773442 1.03E-22 dispersed
Bma08g00465 Bma-Chr8:20799433 Bma13g00200 Bma-Chr13:2773442 6.07E-06 dispersed
Bma12g00955 Bma-Chr12:41484314 Bma13g00200 Bma-Chr13:2773442 7.46E-19 dispersed
Bma13g00200 Bma-Chr13:2773442 Bma14g01062 Bma-Chr14:12856006 0 dispersed
Bma13g00197 Bma-Chr13:2474394 Bma13g00200 Bma-Chr13:2773442 0 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
66841 PF07714 PK_Tyr_Ser-Thr 6.40E-48 CL0016 Bma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma13g00200 - - hbr:110672373 535.413