Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma13g00230 ATGGCACTAGCCAAAGAACCACGCATGGGTTTAGCTCAATCTGCAGACCTATCTTCTCAAAGCTCCCATGAAAGTGCAGCAGAAATGGAAAAAAATGGTGGGTTTTCGAAGAATACTGGTTTTTTGTTCCGCAGTTCGATCTTCAAACCAGAAATTTCTCGGTCTGTGATAAACTTCAAGGAGCAGATCGATCGGAATCTAACCCAGTTAAGCATGGAGTCATCTTTACTGAGTTTTGGCCAAACCCACCGGTTTGCTCAAGAAGACTATTTCAACTGGCCAGCAGAAGAAGAAAGCTTTAACAATGGCTGTCAATTGGGCCAGATGATCAGCTCTCCTAACCTACGCCTTTTGGACGACTTAAACTGCTTTCAGAAAGCTTCCAGCTTTACTCCCATGGCGATTCCTTCAAAAGAGAATCAAAACGGATCAGATGGGTCCAGTAATTATTGGCTATATTCTGAAGAATCAGATGCTATTGGTGAAGAGGAGTCAAGAACTGATCTTGAACTAACCCCACAGAAACGACCCCATCTGGGGGAAAGCGAGCAAACTATGAAGAAACAATGCAATAGTTCAACTAAGAAGACAAAACCAAAGACAAATCCAGCCAAAGATCCGCAAAGTATAGCAGCAAAGAATCGACGAGAGCGGATTAGTGAGAGATTGAAGATTCTGCAAGAACTAGTTCCAAATGGATCCAAGGTTGATTTGGTAACTATGCTGGAGAAAGCAATTAGCTACGTTAAATTTCTGCAGCTTCAAGTGAAGATATTGGCGACAGATGAATTCTGGCCAGTTCAAGGAGGGAAAGCTCCTGATATTTCTCAAGTGAGGGACGCCATTGATGCAATTCTTTCTTCACAAAGAGAGAGAAGCTCAAGCTCAAACAGTACAAAGTAA 903 42.52 MALAKEPRMGLAQSADLSSQSSHESAAEMEKNGGFSKNTGFLFRSSIFKPEISRSVINFKEQIDRNLTQLSMESSLLSFGQTHRFAQEDYFNWPAEEESFNNGCQLGQMISSPNLRLLDDLNCFQKASSFTPMAIPSKENQNGSDGSSNYWLYSEESDAIGEEESRTDLELTPQKRPHLGESEQTMKKQCNSSTKKTKPKTNPAKDPQSIAAKNRRERISERLKILQELVPNGSKVDLVTMLEKAISYVKFLQLQVKILATDEFWPVQGGKAPDISQVRDAIDAILSSQRERSSSSNSTK 300
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 3365013 3366347 - Bma008916.1 Bma13g00230 92959
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma13g00230 300 MobiDBLite consensus disorder prediction 162 211 - -
Bma13g00230 300 Pfam Helix-loop-helix DNA-binding domain 210 253 IPR011598 GO:0046983
Bma13g00230 300 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 203 252 IPR011598 GO:0046983
Bma13g00230 300 MobiDBLite consensus disorder prediction 13 27 - -
Bma13g00230 300 MobiDBLite consensus disorder prediction 164 183 - -
Bma13g00230 300 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 16 291 - -
Bma13g00230 300 CDD bHLH_AtIND_like 204 266 - -
Bma13g00230 300 SMART finulus 209 258 IPR011598 GO:0046983
Bma13g00230 300 Gene3D - 197 260 IPR036638 GO:0046983
Bma13g00230 300 MobiDBLite consensus disorder prediction 184 208 - -
Bma13g00230 300 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 202 261 IPR036638 GO:0046983
Bma13g00230 300 MobiDBLite consensus disorder prediction 1 32 - -
Bma13g00230 300 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 16 291 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma05g00069 Bma-Chr5:2542258 Bma13g00230 Bma-Chr13:3365013 1.26E-25 dispersed
Bma05g00650 Bma-Chr5:38183512 Bma13g00230 Bma-Chr13:3365013 1.22E-20 dispersed
Bma13g00230 Bma-Chr13:3365013 Bma14g01112 Bma-Chr14:14007691 3.83E-168 dispersed
Bma13g00230 Bma-Chr13:3365013 Bma13g00231 Bma-Chr13:3387589 0 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
58206 PF00010 HLH 9.70E-08 No_clan Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma13g00230 - - tcc:18601899 238.81