Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma13g00231 ATGGCACTAGCCAAAGAACCACGCATGGGTTTAGCTCAATCTGCAGACCTATCTTCTCAAAGTTCCCATGAAAGTGTAGCAGAAATGGAAAAAAATTGTGGGTTTTCGAAGAATACTGGTTTTTTGTTCCGCAGTTCGATCTTCAAACCAGAAATTTCTCGGTCTGTGATAAACTTCAAGGAGCAGATCGATCGGAATCTAACCCAGTTAAGCATGGAGTCATCTTTACTGAGTTTTGGCCAAACCCACCGGTTTGCTCAAGAAGACTATTTCAACTGGCCAGCAGAAGAAGAAAGCTTTAACAATGGCTGTCAAGTGGGCCAGATGATCAGCTCTCCTAACCTACGCCTTTTGGACGACTTAAACTGCTTTCAGAGAGCTTCCAGCTTTACTCCCATGGCGATTCCTCCAAAAGAGAATCAAAACGGATCAGATGGGTCTAGTAATTATTGGCTATATTCTGAAGAATCAGACGCTATTGGTGAAGAGGAGTCAAGAACTGATCTTGAACTAACCCCACAGAAACGACCCCATCTGCAGGGGGAAAGCGAGCAAACTATGAAGAAACAATGCAATAGTTCAACTAAGAAGACAAAACCAAAGACAAATCCAGCCAAAGATCCGCAAAGTATAGCAGCAAAGAATCGACGAGAGCGGATTAGTGAGAGATTGAAGATTCTGCAAGAACTAGTTCCAAATGGATCCAAGGTTGATTTGGTAACTATGCTGGAGAAAGCAATTAGCTACGTCAAATTTCTGCAGCTTCAAGTGAAGATATTGGCGACAGATGAATTCTGGCCAGTTGAAGGAGGAAAAGCTCCTGATATTTCTCAAGTGAGGGACGCCATTGATGCAATTCTTTCTTCACAAAGAGAGAGAAGCTCAAGCTCAAACAGTACAAAGTAA 906 42.6 MALAKEPRMGLAQSADLSSQSSHESVAEMEKNCGFSKNTGFLFRSSIFKPEISRSVINFKEQIDRNLTQLSMESSLLSFGQTHRFAQEDYFNWPAEEESFNNGCQVGQMISSPNLRLLDDLNCFQRASSFTPMAIPPKENQNGSDGSSNYWLYSEESDAIGEEESRTDLELTPQKRPHLQGESEQTMKKQCNSSTKKTKPKTNPAKDPQSIAAKNRRERISERLKILQELVPNGSKVDLVTMLEKAISYVKFLQLQVKILATDEFWPVEGGKAPDISQVRDAIDAILSSQRERSSSSNSTK 301
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 3387589 3388924 - Bma008917.1 Bma13g00231 92960
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma13g00231 301 MobiDBLite consensus disorder prediction 162 216 - -
Bma13g00231 301 Pfam Helix-loop-helix DNA-binding domain 211 254 IPR011598 GO:0046983
Bma13g00231 301 SMART finulus 210 259 IPR011598 GO:0046983
Bma13g00231 301 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 14 292 - -
Bma13g00231 301 MobiDBLite consensus disorder prediction 184 209 - -
Bma13g00231 301 CDD bHLH_AtIND_like 205 267 - -
Bma13g00231 301 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 14 292 - -
Bma13g00231 301 MobiDBLite consensus disorder prediction 164 183 - -
Bma13g00231 301 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 203 262 IPR036638 GO:0046983
Bma13g00231 301 Gene3D - 198 261 IPR036638 GO:0046983
Bma13g00231 301 MobiDBLite consensus disorder prediction 1 23 - -
Bma13g00231 301 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 204 253 IPR011598 GO:0046983
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma13g00231 Bma-Chr13:3387589 Bma14g01112 Bma-Chr14:14007691 1.62E-162 dispersed
Bma13g00230 Bma-Chr13:3365013 Bma13g00231 Bma-Chr13:3387589 0 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
58207 PF00010 HLH 9.70E-08 No_clan Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma13g00231 - - tcc:18601899 233.802