Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma13g00255 ATGAATTTCACGATCAAGGAAAGACAGATCGTTCCTACGAGAAGCTCTCCTTCAAGCTTGATCTCTACTTCCCGGCATGGAATCGGTACTTTCCTCATTTTTCTCCTTCTCCTTGTTTTTGCTTCGTCGGCCAACGCGCAGACTGATACGAATCCGAGGAACGATCAGTATCAGGGATTTAGCCCGTCTATGGCGGTGATAGTCGTGGTACTTGTTGCCTCGCTTTTCTTCATGGCTTTCTTCTCCGTCTACATCCGGCAATGCTCCAATCCGCAATCCGCCGGCGGAAGCGTCAGAAACCTTGCGGGAGCAGTCACCGGGAGATCGAGACGCGCCGCTCGCGGCCTCGATGCGAGTGTGATCGGCACGTTTCCGACTTTCGCCTACTCTGAGGTGAAGGAGCTGAAGAAGGGGAATGGGGCGCTAGAATGCGCCGTGTGTTTAAACGAGTTCGAAGAGGACGAAACGCTGCGTTTGATCCCCAAGTGTGACCACGTCTTCCACCCTGACTGCATCGACGCCTGGTTAGGGAACCACACCACCTGTCCGGTTTGCCGAGCCAACCTTGTCCCTCAACCCGACGACTCGGCAGGTCAACCCACTGAGTCCACCGCCGAGTTAGATATTGAGTCCCAAACCCAGGCCGTCGAAGAACAACAGCCAGGTTCGTCTTCTCAAGCGATTGCGCCTCAACCTCCGGCGACGAAAGTTTTGAATAGAAACCGTACACGTGGCTCCAGGTCGAGCGGATTTCGGTGGTTCTATTCTCGTTCTCATTCGACGGGCCATTCTCTAGTCCAACCAGGCGAAAACACGGAGAGGTACACGCTGAGATTGCCGGTGGAGGTAAGAAAGCAAATAATGAACCGGCAATTGAACCGGGCGTCGAGCCTGGTGTTGTTGCCGAGTGAAATCAGCTCACGGGCAGGGTACAGATTGAGTGGCGGTGAAGGGAGCGGTCGAGGGAAGTCCTCCCGTCGTCTCGATCGGACGGCAACAGCAAAGTCCGATAGGTGGGTGTTTTCGATGACTCCGCCGTTTTTAACGAGGATGTCATCCATGAAAACGGCAAAGGTGATGACGGCTGATGGCGAGGGGACGTCGACGCAAGAATCAAAACTTGGAGTGTAG 1131 54.47 MNFTIKERQIVPTRSSPSSLISTSRHGIGTFLIFLLLLVFASSANAQTDTNPRNDQYQGFSPSMAVIVVVLVASLFFMAFFSVYIRQCSNPQSAGGSVRNLAGAVTGRSRRAARGLDASVIGTFPTFAYSEVKELKKGNGALECAVCLNEFEEDETLRLIPKCDHVFHPDCIDAWLGNHTTCPVCRANLVPQPDDSAGQPTESTAELDIESQTQAVEEQQPGSSSQAIAPQPPATKVLNRNRTRGSRSSGFRWFYSRSHSTGHSLVQPGENTERYTLRLPVEVRKQIMNRQLNRASSLVLLPSEISSRAGYRLSGGEGSGRGKSSRRLDRTATAKSDRWVFSMTPPFLTRMSSMKTAKVMTADGEGTSTQESKLGV 376
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 4018789 4019919 + Bma008954.1 Bma13g00255 92984

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma13g00255 376 SMART ring_2 144 185 IPR001841 -
Bma13g00255 376 MobiDBLite consensus disorder prediction 312 331 - -
Bma13g00255 376 CDD RING-H2_EL5_like 143 186 - -
Bma13g00255 376 PANTHER RING FINGER DOMAIN-CONTAINING 31 306 - -
Bma13g00255 376 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL6 31 306 - -
Bma13g00255 376 MobiDBLite consensus disorder prediction 193 247 - -
Bma13g00255 376 Pfam Ring finger domain 143 186 IPR001841 -
Bma13g00255 376 ProSiteProfiles Zinc finger RING-type profile. 144 186 IPR001841 -
Bma13g00255 376 MobiDBLite consensus disorder prediction 194 247 - -
Bma13g00255 376 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 104 191 IPR013083 -
Bma13g00255 376 SUPERFAMILY RING/U-box 122 193 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma13g00255 K10664 ATL6S; E3 ubiquitin-protein ligase ATL6/9/15/31/42/55 [EC:2.3.2.27] - twl:120009752 360.533
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma08g01219 Bma-Chr8:51517389 Bma13g00255 Bma-Chr13:4018789 3.41E-22 dispersed
Bma13g00255 Bma-Chr13:4018789 Bma14g00158 Bma-Chr14:2167625 4.66E-24 dispersed
Bma02g00126 Bma-Chr2:1179072 Bma13g00255 Bma-Chr13:4018789 9.46E-66 transposed
Bma03g00048 Bma-Chr3:446085 Bma13g00255 Bma-Chr13:4018789 1.80E-17 transposed
Bma07g00927 Bma-Chr7:33649379 Bma13g00255 Bma-Chr13:4018789 4.86E-38 transposed
Bma11g00594 Bma-Chr11:8936163 Bma13g00255 Bma-Chr13:4018789 1.90E-21 transposed
Bma11g00749 Bma-Chr11:18505436 Bma13g00255 Bma-Chr13:4018789 1.51E-25 transposed
Bma14g00433 Bma-Chr14:5053904 Bma13g00255 Bma-Chr13:4018789 3.50E-23 transposed
Bma14g01349 Bma-Chr14:25030743 Bma13g00255 Bma-Chr13:4018789 2.14E-169 transposed
Bma02g00185 Bma-Chr2:1721985 Bma13g00255 Bma-Chr13:4018789 8.00E-11 transposed
Bma07g00510 Bma-Chr7:6350088 Bma13g00255 Bma-Chr13:4018789 1.37E-26 transposed
Bma13g00255 Bma-Chr13:4018789 Bma13g00490 Bma-Chr13:9186924 0 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bma13g00490 BCT 32 350 Rapid Response to Elicitors AT3G05200 50.2 9.9e-71 264.2
Bma13g00255 . 32 350 Rapid Response to Elicitors AT3G05200 50.2 1.3e-70 263.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007000 1 1 2 3 2 1 1 1 1 1 1 1 1 1 0 1 1 2 1 1 1 1 1 2 1 1 1 2 1 1 36
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma13g00255 Bma_Chr13 FPKM 16.655874 19.61528 20.872999 23.416979 29.152092 22.120495 27.8675 27.419907 25.831299 25.751551