Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma13g00255 ATGAATTTCACGATCAAGGAAAGACAGATCGTTCCTACGAGAAGCTCTCCTTCAAGCTTGATCTCTACTTCCCGGCATGGAATCGGTACTTTCCTCATTTTTCTCCTTCTCCTTGTTTTTGCTTCGTCGGCCAACGCGCAGACTGATACGAATCCGAGGAACGATCAGTATCAGGGATTTAGCCCGTCTATGGCGGTGATAGTCGTGGTACTTGTTGCCTCGCTTTTCTTCATGGCTTTCTTCTCCGTCTACATCCGGCAATGCTCCAATCCGCAATCCGCCGGCGGAAGCGTCAGAAACCTTGCGGGAGCAGTCACCGGGAGATCGAGACGCGCCGCTCGCGGCCTCGATGCGAGTGTGATCGGCACGTTTCCGACTTTCGCCTACTCTGAGGTGAAGGAGCTGAAGAAGGGGAATGGGGCGCTAGAATGCGCCGTGTGTTTAAACGAGTTCGAAGAGGACGAAACGCTGCGTTTGATCCCCAAGTGTGACCACGTCTTCCACCCTGACTGCATCGACGCCTGGTTAGGGAACCACACCACCTGTCCGGTTTGCCGAGCCAACCTTGTCCCTCAACCCGACGACTCGGCAGGTCAACCCACTGAGTCCACCGCCGAGTTAGATATTGAGTCCCAAACCCAGGCCGTCGAAGAACAACAGCCAGGTTCGTCTTCTCAAGCGATTGCGCCTCAACCTCCGGCGACGAAAGTTTTGAATAGAAACCGTACACGTGGCTCCAGGTCGAGCGGATTTCGGTGGTTCTATTCTCGTTCTCATTCGACGGGCCATTCTCTAGTCCAACCAGGCGAAAACACGGAGAGGTACACGCTGAGATTGCCGGTGGAGGTAAGAAAGCAAATAATGAACCGGCAATTGAACCGGGCGTCGAGCCTGGTGTTGTTGCCGAGTGAAATCAGCTCACGGGCAGGGTACAGATTGAGTGGCGGTGAAGGGAGCGGTCGAGGGAAGTCCTCCCGTCGTCTCGATCGGACGGCAACAGCAAAGTCCGATAGGTGGGTGTTTTCGATGACTCCGCCGTTTTTAACGAGGATGTCATCCATGAAAACGGCAAAGGTGATGACGGCTGATGGCGAGGGGACGTCGACGCAAGAATCAAAACTTGGAGTGTAG 1131 54.47 MNFTIKERQIVPTRSSPSSLISTSRHGIGTFLIFLLLLVFASSANAQTDTNPRNDQYQGFSPSMAVIVVVLVASLFFMAFFSVYIRQCSNPQSAGGSVRNLAGAVTGRSRRAARGLDASVIGTFPTFAYSEVKELKKGNGALECAVCLNEFEEDETLRLIPKCDHVFHPDCIDAWLGNHTTCPVCRANLVPQPDDSAGQPTESTAELDIESQTQAVEEQQPGSSSQAIAPQPPATKVLNRNRTRGSRSSGFRWFYSRSHSTGHSLVQPGENTERYTLRLPVEVRKQIMNRQLNRASSLVLLPSEISSRAGYRLSGGEGSGRGKSSRRLDRTATAKSDRWVFSMTPPFLTRMSSMKTAKVMTADGEGTSTQESKLGV 376
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 4018789 4019919 + Bma008954.1 Bma13g00255 92984
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma13g00255 376 SMART ring_2 144 185 IPR001841 -
Bma13g00255 376 MobiDBLite consensus disorder prediction 312 331 - -
Bma13g00255 376 CDD RING-H2_EL5_like 143 186 - -
Bma13g00255 376 PANTHER RING FINGER DOMAIN-CONTAINING 31 306 - -
Bma13g00255 376 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL6 31 306 - -
Bma13g00255 376 MobiDBLite consensus disorder prediction 193 247 - -
Bma13g00255 376 Pfam Ring finger domain 143 186 IPR001841 -
Bma13g00255 376 ProSiteProfiles Zinc finger RING-type profile. 144 186 IPR001841 -
Bma13g00255 376 MobiDBLite consensus disorder prediction 194 247 - -
Bma13g00255 376 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 104 191 IPR013083 -
Bma13g00255 376 SUPERFAMILY RING/U-box 122 193 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma08g01219 Bma-Chr8:51517389 Bma13g00255 Bma-Chr13:4018789 3.41E-22 dispersed
Bma13g00255 Bma-Chr13:4018789 Bma14g00158 Bma-Chr14:2167625 4.66E-24 dispersed
Bma02g00126 Bma-Chr2:1179072 Bma13g00255 Bma-Chr13:4018789 9.46E-66 transposed
Bma03g00048 Bma-Chr3:446085 Bma13g00255 Bma-Chr13:4018789 1.80E-17 transposed
Bma07g00927 Bma-Chr7:33649379 Bma13g00255 Bma-Chr13:4018789 4.86E-38 transposed
Bma11g00594 Bma-Chr11:8936163 Bma13g00255 Bma-Chr13:4018789 1.90E-21 transposed
Bma11g00749 Bma-Chr11:18505436 Bma13g00255 Bma-Chr13:4018789 1.51E-25 transposed
Bma14g00433 Bma-Chr14:5053904 Bma13g00255 Bma-Chr13:4018789 3.50E-23 transposed
Bma14g01349 Bma-Chr14:25030743 Bma13g00255 Bma-Chr13:4018789 2.14E-169 transposed
Bma02g00185 Bma-Chr2:1721985 Bma13g00255 Bma-Chr13:4018789 8.00E-11 transposed
Bma07g00510 Bma-Chr7:6350088 Bma13g00255 Bma-Chr13:4018789 1.37E-26 transposed
Bma13g00255 Bma-Chr13:4018789 Bma13g00490 Bma-Chr13:9186924 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma13g00255 K10664 - twl:120009752 360.533