Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma13g00281 ATGGTGCTCTCTAAGACGGCGTCGGAAAGCGATGTGTCGATCCATTCGACCTTTGCGTCTCGCTATGTCCGAGCCTCCCTTCCGAGGTACTTAGCTCGAACACTCCACATGATCTTCTGTTTTTGTTTTGTTTTTTGTTTTTCTGCCCAGAATCATGAAGAATGTTGCAGGTTCAAGATGCCGGAAATGTCGACCCCGAAAGAGGCGGCTTACCAGATAATCAACGACGAGTTGATGTTGGACGGAAACCCGCGGCTGAACTTGGCGTCTTTCGTCACCACTTGGATGGAGCCGGAATGCGATAAGCTAATCATGGACTCCATTAACAAGAACTACGTCGACATGGATGAGTATCCTGTCACTACCGAGCTTCAGAACCGGTGTGTGAACATTATAGCTCATCTGTTCAATGCTCCACTCGGTGATTCCGAGGCGGCTGTCGGAGTTGGAACGGTGGGGTCGTCGGAGGCCATTATGTTGGCCGGCTTAGCATTCAAGAGGAAGTGGCAAAATAAGCGAAAGGCCGAGGGCAAACCCTACGACAAACCAAATATTGTCACCGGAGCTAACGTTCAGGTATGCTGGGAGAAATTTGCAAGATACTTTGAAGTGGAGCTGAAGGAGGTGAAACTGAGAGAAGGATACTACGTTATGGATCCAGAAAAAGCTGTAGAAATGGTGGATGAAAACACTATCTGTGTTGCTGCTATTTTGGGCTCTACCCTCAATGGTGAATTTGAGGATGTCAAGCTATTGAATGATCTCTTGGTGAAGAAGAACAGCCAAACTGGATGGGACACACCCATTCACGTTGACGCCGCAAGCGGAGGGTTCATAGCGCCATTTCTGTACCCAGAGCTGGAGTGGGACTTTCGTTTGGAACAGGTGAAGAGCATCAACGTCAGCGGCCACAAATATGGGCTGGTCTACGCCGGGATCGGGTGGGTGATTTGGAAGAGCAAGCAGGATTTGCCTGAAGAACTCATCTTCCATATCAACTATCTCGGCGCCGATCAACCCACCTTCACCCTCAATTTCTCCAAAGGTTCTAGCCAAGTCATTGCTCAGTACTATCAACTCATTCGCCTTGGCCATGAGGGATATCGAAACGTGATGGAAAATTGTCGCGACAACATGATTGTGCTCAAAGAAGGGTTAGAAAAAACCGGGCGATTCAACATAGTCTCGAAGGACGAAGGAGTCCCCCTCGTTGCCTTCTCCTTGAAAGACAACCTCCGACACAATGAGTTCGAGGTTTCCGAGATGTTGAGGCGCTTCGGATGGATCGTTCCGGCCTACACAATGCCTCCAGATGCACAACACATCACTGTCCTTCGAGTCGTTATTCGAGAAGACTTCTCGCGCACATTGGCAGAGCGGCTCGTGTTTGACATCGAGAAAGTGTTGCACGAGCTCGACACTCTACCTGCTAGGGTTACCGCCAAGTTAGCGATTTCCAAAGAAGAGACGACTCAATGCAATGGCACGACGACTCAATGCAATGGCACCGTAGTGGCAAAGAAAAGTGCTCTTGAGGTGCAGAGGGAGATCACTGCAACTTGGAAGAAGTTTGTTCTTGAGAGTAAGAATAAGACCAATGGCATTTGCTAG 1611 49.04 MVLSKTASESDVSIHSTFASRYVRASLPRYLARTLHMIFCFCFVFCFSAQNHEECCRFKMPEMSTPKEAAYQIINDELMLDGNPRLNLASFVTTWMEPECDKLIMDSINKNYVDMDEYPVTTELQNRCVNIIAHLFNAPLGDSEAAVGVGTVGSSEAIMLAGLAFKRKWQNKRKAEGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLREGYYVMDPEKAVEMVDENTICVAAILGSTLNGEFEDVKLLNDLLVKKNSQTGWDTPIHVDAASGGFIAPFLYPELEWDFRLEQVKSINVSGHKYGLVYAGIGWVIWKSKQDLPEELIFHINYLGADQPTFTLNFSKGSSQVIAQYYQLIRLGHEGYRNVMENCRDNMIVLKEGLEKTGRFNIVSKDEGVPLVAFSLKDNLRHNEFEVSEMLRRFGWIVPAYTMPPDAQHITVLRVVIREDFSRTLAERLVFDIEKVLHELDTLPARVTAKLAISKEETTQCNGTTTQCNGTVVAKKSALEVQREITATWKKFVLESKNKTNGIC 536
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 4759971 4763180 - Bma008986.1 Bma13g00281 93010
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma13g00281 536 PANTHER GLUTAMATE DECARBOXYLASE 52 536 IPR010107 GO:0004351|GO:0006536|GO:0030170
Bma13g00281 536 PANTHER GLUTAMATE DECARBOXYLASE 1 30 IPR010107 GO:0004351|GO:0006536|GO:0030170
Bma13g00281 536 PANTHER GLUTAMATE DECARBOXYLASE 52 536 - -
Bma13g00281 536 PANTHER GLUTAMATE DECARBOXYLASE 1 30 - -
Bma13g00281 536 Pfam Pyridoxal-dependent decarboxylase conserved domain 62 409 IPR002129 GO:0016830|GO:0019752|GO:0030170
Bma13g00281 536 Gene3D - 45 93 - -
Bma13g00281 536 Gene3D - 389 476 - -
Bma13g00281 536 TIGRFAM Glu-decarb-GAD: glutamate decarboxylase 52 472 IPR010107 GO:0004351|GO:0006536|GO:0030170
Bma13g00281 536 Gene3D - 94 388 IPR015421 GO:0003824
Bma13g00281 536 SUPERFAMILY PLP-dependent transferases 57 472 IPR015424 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g01169 Bma-Chr1:12911966 Bma13g00281 Bma-Chr13:4759971 1.31E-75 dispersed
Bma12g01270 Bma-Chr12:45712232 Bma13g00281 Bma-Chr13:4759971 0 dispersed
Bma13g00281 Bma-Chr13:4759971 Bma02g00560 Bma-Chr2:11649214 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma13g00281 K01580 - csv:101216119 884.019