Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma13g00283 ATGTCACTCTTTCTTCGTCTTCACTTCCTCTTCACGCTTAGTGCAACCATCGCATCAATGGCGGAATCCCATTACTCCTCGTTTCCACAGCAGGATTCTTCGCCCTCTTCCTCACTCTCCGACTGGAGATCTGCCCGTGCCACTTATTACGCCGCCTCCGACCCTCGTGACGCTGTCGGCGGTGCCTGCGGCTACGGCGACCTGGGGAAGGCCGGGTACGGTATGGCCACGGTGGGGCTGAGTGAGACGCTGTTTGAGCGCGGTCAGATCTGCGGCGCTTGCTTCCAGCTGAAGTGTGTTGAGGATATCCGGTGGTGTATTCCCGGAACTTCTATCATCGTCACAGCGACGAACTTTTGTGCCCCTAATTACGGGTTCACGGCGGAGGGAGGTGGCCATTGTAACCCTCCCAATAATCATTTTGTGCTTCCCATTGAGGCGTTCGAGAAGATTGCTATCTGGAAAGCAGGGAATATGCCTGTTCAATATCGCAGAATCAAGTGCAGAAAAGAAGGTGGGATTCGAATTTCGATAGATGGGGCAGGCATCTTCATTTCTGTGCTGATAAGCAACGTCGGTGGGGCTGGGGATGTACTGGCGGTGAAGATCAAAGGGTCAAGAACCGGTTGGCTTCCGATGGGACGAAATTGGGGACAAAACTGGCATATTAATGCCGATTTGAAGAACCAACCTCTGTCCTTTGAGGTAACAAACAGTGATGGAATTACTCTAACATCTTACAACGTTGCTCCCAAGGATTGGAACTTTGGACAAACCTTTGAAGGCAAACAATTCGACTCT 801 51.56 MSLFLRLHFLFTLSATIASMAESHYSSFPQQDSSPSSSLSDWRSARATYYAASDPRDAVGGACGYGDLGKAGYGMATVGLSETLFERGQICGACFQLKCVEDIRWCIPGTSIIVTATNFCAPNYGFTAEGGGHCNPPNNHFVLPIEAFEKIAIWKAGNMPVQYRRIKCRKEGGIRISIDGAGIFISVLISNVGGAGDVLAVKIKGSRTGWLPMGRNWGQNWHINADLKNQPLSFEVTNSDGITLTSYNVAPKDWNFGQTFEGKQFDS 267
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 4775413 4777323 + Bma030581 Bma13g00283 93012
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma13g00283 267 PRINTS Expansin signature 131 148 IPR002963 GO:0009664
Bma13g00283 267 PRINTS Expansin signature 72 86 IPR002963 GO:0009664
Bma13g00283 267 PRINTS Expansin signature 112 122 IPR002963 GO:0009664
Bma13g00283 267 PRINTS Expansin signature 99 110 IPR002963 GO:0009664
Bma13g00283 267 PRINTS Expansin signature 248 264 IPR002963 GO:0009664
Bma13g00283 267 PRINTS Expansin signature 219 240 IPR002963 GO:0009664
Bma13g00283 267 PRINTS Expansin signature 148 161 IPR002963 GO:0009664
Bma13g00283 267 PRINTS Expansin signature 172 184 IPR002963 GO:0009664
Bma13g00283 267 PRINTS Expansin signature 184 205 IPR002963 GO:0009664
Bma13g00283 267 PRINTS Expansin/Lol pI family signature 41 56 IPR007118 GO:0005576
Bma13g00283 267 PRINTS Expansin/Lol pI family signature 210 224 IPR007118 GO:0005576
Bma13g00283 267 PRINTS Expansin/Lol pI family signature 81 99 IPR007118 GO:0005576
Bma13g00283 267 PRINTS Expansin/Lol pI family signature 59 77 IPR007118 GO:0005576
Bma13g00283 267 PRINTS Expansin/Lol pI family signature 156 172 IPR007118 GO:0005576
Bma13g00283 267 PRINTS Expansin/Lol pI family signature 248 262 IPR007118 GO:0005576
Bma13g00283 267 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 60 173 IPR007112 -
Bma13g00283 267 Gene3D - 173 265 IPR036749 -
Bma13g00283 267 Pfam Expansin C-terminal domain 174 251 IPR007117 -
Bma13g00283 267 Pfam Lytic transglycolase 78 163 IPR009009 -
Bma13g00283 267 Gene3D - 26 169 IPR036908 -
Bma13g00283 267 SMART dpbb_1 77 163 IPR007112 -
Bma13g00283 267 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 183 262 IPR007117 -
Bma13g00283 267 SUPERFAMILY PHL pollen allergen 170 262 IPR036749 -
Bma13g00283 267 PANTHER EXPANSIN-A15 23 266 IPR002963 GO:0009664
Bma13g00283 267 PANTHER EXPANSIN-A13 23 266 - -
Bma13g00283 267 SUPERFAMILY Barwin-like endoglucanases 41 191 IPR036908 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma13g00283 Bma-Chr13:4775413 Bma08g01001 Bma-Chr8:49073113 1.06E-89 dispersed
Bma13g00283 Bma-Chr13:4775413 Bma08g01058 Bma-Chr8:49674715 3.83E-92 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma13g00283 - - csv:101206236 469.929